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PLM4_5_b1_sep16_scaffold_3038

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3038_1
R_NC10_66_22, NC10, Bacteria

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comp(65..2773)
DNA (2709bp) protein (903aa)
Aconitate hydratase 1 Tax=uncultured candidate division OP1 bacterium RepID=H5SMH3_9BACT
acoN; aconitate hydratase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_5_b1_sep16_scaffold_3038_2
unknown

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2889..3299
DNA (411bp) protein (137aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3038_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3336..4088)
DNA (753bp) protein (251aa)
response regulator receiver protein; K02477 two-component system, LytT family, response regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
LytR/AlgR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3038_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4081..5169)
DNA (1089bp) protein (363aa)
Two-component sensor histidine kinase Tax=Janthinobacterium sp. HH01 RepID=L9PQF8_9BURK bin=16ft_combo_ws3_JS1 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sensor signal transduction histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3038_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5174..5971)
DNA (798bp) protein (266aa)
transmembrane protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3038_6
unknown

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comp(5961..6245)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3038_7
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6242..6652)
DNA (411bp) protein (137aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003786B34
Uncharacterized protein {ECO:0000313|EMBL:KGF81137.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
transmembrane protein
PLM4_5_b1_sep16_scaffold_3038_8
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6865..7515)
DNA (651bp) protein (217aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
msrA; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
peptide methionine sulfoxide reductase Tax=Pseudomonas sp. S9 RepID=UPI0002557109
Displaying 8 items

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