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PLM4_5_b1_sep16_scaffold_385

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_385_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2..481)
DNA (480bp) protein (160aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
uvrA; UvrABC system protein A
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(532..1800)
DNA (1269bp) protein (423aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SBT1_9BACT bin=16ft_combo_ws3_JS1 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1804..3021)
DNA (1218bp) protein (406aa)
ABC efflux pump, inner membrane subunit Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIC3_KORVE bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
antimicrobial peptide ABC transporter permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3018..3764)
DNA (747bp) protein (249aa)
Putative ABC transporter Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC73_9ZZZZ bin=16ft_combo_ws3_JS1 species=uncultured marine microorganism HF4000_APKG10H12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
antimicrobial peptide ABC transporter ATPase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3793..5127)
DNA (1335bp) protein (445aa)
secretion protein HlyD; K02005 HlyD family secretion protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5140..6498)
DNA (1359bp) protein (453aa)
outer membrane macrolide efflux protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
outer membrane efflux protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6577..7332)
DNA (756bp) protein (252aa)
alias=16ft_combo_ws3_scaffold_16_90 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7553..8275)
DNA (723bp) protein (241aa)
TonB family protein Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QWL9_CHLT3 bin=16ft_combo_ws3_JS1 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8272..8766)
DNA (495bp) protein (165aa)
biopolymer transport protein ExbD/TolR bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
biopolymer transport protein ExbD/TolR
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8784..9281)
DNA (498bp) protein (166aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9294..10037)
DNA (744bp) protein (248aa)
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MotA/TolQ/ExbB proton channel family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10060..10398)
DNA (339bp) protein (113aa)
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
anti-anti-sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10421..10768)
DNA (348bp) protein (116aa)
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
anti-anti-sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10765..12546)
DNA (1782bp) protein (594aa)
TPR repeat-containing protein Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3M3_CYAP8 bin=16ft_combo_ws3_JS1 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TPR repeat domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12616..13407)
DNA (792bp) protein (264aa)
Phosphate binding protein Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CK35_SYNLT bin=16ft_combo_ws3_JS1 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphate binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_16
unknown

Not on your lists

13589..13816
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_385_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13969..15288)
DNA (1320bp) protein (440aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase Tax=Candidatus Chloracidobacterium thermophilum RepID=G2LDV9_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15485..17515
DNA (2031bp) protein (677aa)
TPR-repeat-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17522..18613
DNA (1092bp) protein (364aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18627..19703)
DNA (1077bp) protein (359aa)
histidinol-phosphate phosphatase family protein; K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylocella silvestris genus=Methylocella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
histidinol-phosphate phosphatase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19714..20709)
DNA (996bp) protein (332aa)
Lipopolysaccharide heptosyltransferase II Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SR3_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lipopolysaccharide heptosyltransferase II
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(20717..22165)
DNA (1449bp) protein (483aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH56_9FIRM bin=16ft_combo_ws3_JS1 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_23
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

22359..23207
DNA (849bp) protein (283aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000364220E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_5_b1_sep16_scaffold_385_24
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

23230..25059
DNA (1830bp) protein (610aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
fumarate reductase/succinate dehydrogenase flavoprotein domain protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_5_b1_sep16_scaffold_385_25
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

25056..25826
DNA (771bp) protein (257aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003651092
succinate dehydrogenase and fumarate reductase iron-sulfur protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_5_b1_sep16_scaffold_385_26
unknown

Not on your lists

25835..26074
DNA (240bp) protein (80aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_385_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26071..26949)
DNA (879bp) protein (293aa)
Glycosyl transferase family 9 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QRL3_CHLP8 bin=16ft_combo_ws3_JS1 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl transferase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26949..28826)
DNA (1878bp) protein (626aa)
ABC-type multidrug transport system protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AGG7_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter (permease and ATP-binding protein)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(28837..29274)
DNA (438bp) protein (146aa)
Putative uncharacterized protein Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2ULR9_AKKM8 bin=16ft_combo_ws3_JS1 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Verrucomicrobia/Planctomycetes-restricted protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_385_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(29287..30906)
DNA (1620bp) protein (540aa)
L-aspartate oxidase Tax=Rhodothermus marinus RepID=D0MI88_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
L-aspartate oxidase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 31 in total

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