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PLM4_5_b1_sep16_scaffold_509

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_509_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2..718)
DNA (717bp) protein (239aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_2
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2261..2806)
DNA (546bp) protein (182aa)
pectate lyase Tax=Thermophagus xiamenensis RepID=UPI000255DAC1
Maltose O-acetyltransferase {ECO:0000313|EMBL:GAO31669.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
acetyltransferase
PLM4_5_b1_sep16_scaffold_509_3

Not on your lists

comp(2803..3294)
DNA (492bp) protein (164aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI000380C2EF
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:AIA16430.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
N-acetyltransferase GCN5
PLM4_5_b1_sep16_scaffold_509_4
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

comp(3359..4081)
DNA (723bp) protein (241aa)
Short-chain dehydrogenase/reductase SDR Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JE30_ANAD2
short-chain dehydrogenase/reductase SDR
Tax=CG_Proteo_01
PLM4_5_b1_sep16_scaffold_509_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4180..5820)
DNA (1641bp) protein (547aa)
60 kDa chaperonin Tax=Methylacidiphilum RepID=CH60_METI4 bin=16ft_combo_ws3_JS1 species=unknown genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
groEL; chaperonin GroEL
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5874..6173)
DNA (300bp) protein (100aa)
chaperonin Cpn10; K04078 chaperonin GroES bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
chaperonin Cpn10
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6465..7307)
DNA (843bp) protein (281aa)
alias=16ft_combo_ws3_scaffold_2431_7 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7377..8723)
DNA (1347bp) protein (449aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Anaeromyxobacter RepID=Q2IQM1_ANADE bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component Fis family sigma54-specific transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8753..9226)
DNA (474bp) protein (158aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B2W7_HERA2 bin=16ft_combo_ws3_JS1 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9305..9868)
DNA (564bp) protein (188aa)
Uncharacterized protein Tax=Rhodothermus marinus RepID=D0MJT0_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10079..10930)
DNA (852bp) protein (284aa)
Metallophosphoesterase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQQ8_ROSS1 bin=16ft_combo_ws3_JS1 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
metallophosphoesterase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11141..12367
DNA (1227bp) protein (409aa)
Putative uncharacterized protein Tax=Thiorhodovibrio sp. 970 RepID=H8Z6A3_9GAMM bin=16ft_combo_ws3_JS1 species=Thiorhodovibrio sp. 970 genus=Thiorhodovibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_13
R_OD1_Uhrbacteria_49_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12647..13648)
DNA (1002bp) protein (334aa)
Magnesium and cobalt transport protein CorA Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AVR9_HERA2
magnesium and cobalt transport protein CorA
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_49_11_curated
PLM4_5_b1_sep16_scaffold_509_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13645..14595)
DNA (951bp) protein (317aa)
Histone deacetylase superfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A43_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
deacetylase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_15
unknown

Not on your lists

14691..16172
DNA (1482bp) protein (494aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_509_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16081..16989)
DNA (909bp) protein (303aa)
Uncharacterized protein Tax=Tetrasphaera elongata Lp2 RepID=N0DZ78_9MICO bin=16ft_combo_ws3_JS1 species=Tetrasphaera elongata genus=Tetrasphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Predicted permease, DMT superfamily
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16986..17660)
DNA (675bp) protein (225aa)
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Redox-sensing transcriptional repressor rex
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(17734..20250)
DNA (2517bp) protein (839aa)
DNA gyrase subunit A Tax=Melioribacter roseus (strain P3M) RepID=I7A2W9_MELRP bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA gyrase subunit A
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20344..20943)
DNA (600bp) protein (200aa)
alias=16ft_combo_ws3_scaffold_2095_7 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20943..22904)
DNA (1962bp) protein (654aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(23048..24193)
DNA (1146bp) protein (382aa)
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA polymerase III, beta subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24568..25986)
DNA (1419bp) protein (473aa)
Chromosomal replication initiator protein DnaA Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RA69_AMMDK bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
chromosomal replication initiator protein DnaA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26477..27121)
DNA (645bp) protein (215aa)
alias=16ft_combo_ws3_scaffold_2095_13 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27189..28088)
DNA (900bp) protein (300aa)
hypothetical protein; K06976 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
GCN5-related N-acetyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_509_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28302..28889
DNA (588bp) protein (196aa)
OmpR; response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 25 items

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