ggKbase home page

PLM4_5_b1_sep16_scaffold_3082_2

Organism: PLM4_5_b1_sep16_Verrucomicrobia_Verrucomicrobiales_60_7

near complete RP 41 / 55 MC: 1 BSCG 42 / 51 ASCG 9 / 38 MC: 1
Location: 997..2361

Top 3 Functional Annotations

Value Algorithm Source
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Pedosphaera parvula Ellin514 RepID=B9XR31_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 74.7
  • Coverage: 455.0
  • Bit_score: 688
  • Evalue 4.60e-195
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF57727.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 455.0
  • Bit_score: 688
  • Evalue 6.40e-195
atoC; DNA-binding response regulator, NtrC family (contains REC, AAA-type ATPase, and DNA-binding Fis domains) similarity KEGG
DB: KEGG
  • Identity: 55.0
  • Coverage: 460.0
  • Bit_score: 492
  • Evalue 1.00e-136

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1365
ATGCCGACATTGCTCATCGTCGATGACGAGAAAACCACGCGTGAGGGCCTCCGGGCCGCGCTCGAGGAGCGTTATGATGTCTACCTGGCGGAGGACGCAAAATCCGCCATGGAGTTGCTCGAAAAGGAGCCGTTCGACGTAATGCTGACCGATTTCCGGCTGCCCAATGAGGATGGAATGAAACTCATCGCCCGGGCGAAGTCGCTCTCCCGTCCTCCTATCTGCATCCTCATGACGGCCTACGGCTCGGAGGAATTGGCCGTGGAGGCGATGAAGCGCGGGGCGGATGATTACATCGCCAAGGGGCGCCTCCAGATCGAGGAATTGGAGATGCGCATCGCCAAGGCTTTGCGGCAGCAAAACCTCGAGGCGGAGAACGTGGCCTTGCGCCAGCAGTTGGACACTCGCTTCAGCCTCGGAAACATTATCGGCGAATCGCCCGCCATGCGCGAAGTCCTCGAGATGGTGCGGCAGGTGGCCCCCACCCGCGCCACGGTTTTGCTCCTGGGCGAAAGCGGCACCGGCAAGGAAATGGTCGCCCGGCTCGTCCATCAAATCAGCCCGCGCGCGAAACAGCCCATGGTTTCGGTTCACTGTGGCGCCTTGCCGGCGACCCTGCTGGAGAGCGAATTATTCGGCCACGAAAAGGGAGCTTTCACCGGCGCCCACGAACGCCGCATCGGCCGTTTTGAACAGGCCCAGGGAGGCACCCTGTTTCTTGATGAAATCGGCGAGATCGATGCCACCATCCAAATCAAGCTGCTGCGCTTTCTTGGCGAACGAACCTTCGAGCGCGTCGGTTCCAACCGCACCATCACCGCCGATGTCCGGTTGATCGCCGCAACCAACAAAAACCTGGAAGAGTTGGTCAAGGCGGGCACGTTTCGGGAGGACTTGTATTTCCGGCTCAAGGTCGTCGAAGTCATTTTGCCGCCACTCAGGGAGCGGCCTGAGGACGTGCCCTTGCTCGCCCATGCTTTCCTCAAGGAGTTCGCCTCCGAAAACGGCAAGCAGATCACCAGTTTCACCACCGAAGTGCTGGAACTCTTGATAAAGTACCCCTGGCCGGGAAATGTCCGCGAACTCAAGACTGCCATAGAGCATGCCGTCGTTATGTGCCGCGGCGACAAATTGACCGCCAAAGATTTTCCCGCCTCGGTTCGCAATTTTGCGGGGGATCCTGTCGCCGACCCGCAACGGTTGCTCTCGCGGGGCAGCATAACCTTGCAGGAGGCTGAGAAACAGCTCATTATCAGGGCCTTGAAGGAAACCGATGGCAACCGCACCCTCGCGGCCCGGAAGCTGGGCATGAGCCGCCGCAATCTGCATCGTAAACTGCATAAGCATCAACTGGAAGGTCTTTAG
PROTEIN sequence
Length: 455
MPTLLIVDDEKTTREGLRAALEERYDVYLAEDAKSAMELLEKEPFDVMLTDFRLPNEDGMKLIARAKSLSRPPICILMTAYGSEELAVEAMKRGADDYIAKGRLQIEELEMRIAKALRQQNLEAENVALRQQLDTRFSLGNIIGESPAMREVLEMVRQVAPTRATVLLLGESGTGKEMVARLVHQISPRAKQPMVSVHCGALPATLLESELFGHEKGAFTGAHERRIGRFEQAQGGTLFLDEIGEIDATIQIKLLRFLGERTFERVGSNRTITADVRLIAATNKNLEELVKAGTFREDLYFRLKVVEVILPPLRERPEDVPLLAHAFLKEFASENGKQITSFTTEVLELLIKYPWPGNVRELKTAIEHAVVMCRGDKLTAKDFPASVRNFAGDPVADPQRLLSRGSITLQEAEKQLIIRALKETDGNRTLAARKLGMSRRNLHRKLHKHQLEGL*