ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_10665

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_10665_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

386..1186
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase/isomerase family protein Tax=delta proteobacterium NaphS2 RepID=D8F324_9DELT
3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1674..2438)
DNA (765bp) protein (255aa)
coaX; type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) (EC:2.7.1.33)
Type III pantothenate kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT7_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2483..3295)
DNA (813bp) protein (271aa)
BirA bifunctional protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MR55_CORCM
birA; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_4
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(3385..6189)
DNA (2805bp) protein (935aa)
Valine--tRNA ligase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHV3_CORCM
valS; valyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(6263..8071)
DNA (1809bp) protein (603aa)
Response regulator receiver protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAD7_ANADF
response regulator receiver protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8393..8878)
DNA (486bp) protein (162aa)
CheW protein bin=GWB2_Proteobacteria_55_19 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
cheW2; chemotaxis protein Chew
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8907..9494)
DNA (588bp) protein (196aa)
Chemotaxis signal transduction protein Tax=Methylophaga aminisulfidivorans MP RepID=F5SZW7_9GAMM
chemotaxis protein CheW
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

9703..10869
DNA (1167bp) protein (389aa)
Oxidoreductase domain protein bin=GWA2_Methylomirabilis_73_35 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Oxidoreductase domain protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_9
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11044..12051
DNA (1008bp) protein (336aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WIZ1_DESOD
TRAP dicarboxylate family transporter subunit DctP
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_65_b1_redo_sep16_scaffold_10665_10
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12135..12617
DNA (483bp) protein (161aa)
TRAP-type C4-dicarboxylate transport system, small permease component Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WIZ0_DESOD
TRAP-type C4-dicarboxylate transport system, small permease component
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:AET69715.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
PLM4_65_b1_redo_sep16_scaffold_10665_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12614..13354
DNA (741bp) protein (247aa)
TRAP-type C4-dicarboxylate transport system, large permease component bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP dicarboxylate transporter subunit DctM
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_10665_12
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13375..13836
DNA (462bp) protein (154aa)
TRAP-type C4-dicarboxylate transport system, large permease component bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP-type C4-dicarboxylate transport system, large permease component
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_65_b1_redo_sep16_scaffold_10665_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

13918..14907
DNA (990bp) protein (330aa)
Luciferase family protein bin=GWC2_Methylomirabilis_70_24 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Luciferase-like, subgroup
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

15017..15928
DNA (912bp) protein (304aa)
ilvE; branched-chain-amino-acid aminotransferase (BCAT) (EC:2.6.1.42) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ilvE; branched-chain-amino-acid aminotransferase (BCAT) (EC:2.6.1.42)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16075..16347)
DNA (273bp) protein (91aa)
hypothetical protein bin=bin3_NC10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16372..17766)
DNA (1395bp) protein (465aa)
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14)
Amidophosphoribosyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFN0_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(17902..19068)
DNA (1167bp) protein (389aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
Putative PLP-dependent aminotransferase, putative aspartate aminotransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFN2_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10665_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19323..19661)
DNA (339bp) protein (113aa)
lipA; lipoyl synthase LipA (EC:2.8.1.8)
Lipoyl synthase Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VI21_CLOSH
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 18 items

View Taxonomy