ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_19227

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_19227_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2..319)
DNA (318bp) protein (106aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(307..723)
DNA (417bp) protein (139aa)
KpsF/GutQ family protein (EC:5.3.1.13)
KpsF/GutQ family protein bin=GWD2_Nitrospirae-related_57_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_3
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1016..2173)
DNA (1158bp) protein (386aa)
Glycosyl transferase, group 1 bin=GWF2_Geobacter_54_21 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
group 1 glycosyl transferase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_b1_redo_sep16_scaffold_19227_4
GWB1_OD1_40_14, Parcubacteria, Bacteria

Not on your lists

comp(2170..2997)
DNA (828bp) protein (276aa)
Uncharacterized protein Tax=Nitrobacter sp. Nb-311A RepID=A3WUF8_9BRAD
Methyltransferase type 11 {ECO:0000313|EMBL:KKR45370.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_40_14.;"
methyltransferase-like protein
PLM4_65_b1_redo_sep16_scaffold_19227_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3046..4266)
DNA (1221bp) protein (407aa)
Glycosyl transferase, family 9 bin=GWB2_Proteobacteria_55_19 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_6
unknown

Not on your lists

comp(4272..4565)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_19227_7
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(4735..5766)
DNA (1032bp) protein (344aa)
Methyltransferase type 11 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Sulfurospirillum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
type 11 methyltransferase
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_19227_8
GWA1_OP11_39_12_plus, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(5876..6691)
DNA (816bp) protein (272aa)
Methyltransferase {ECO:0000313|EMBL:KKQ97158.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_39_12.;"
Methyltransferase type 11 bin=GWC2_Methylomirabilis_70_24 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Methyltransferase type 11
PLM4_65_b1_redo_sep16_scaffold_19227_9
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(6688..7806)
DNA (1119bp) protein (373aa)
Glycosyl transferase, group 1 {ECO:0000313|EMBL:KJR40861.1}; EC=2.4.-.- {ECO:0000313|EMBL:KJR40861.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
Glycosyl transferase group 1 Tax=Chloroflexus RepID=A9WKK0_CHLAA
group 1 glycosyl transferase
PLM4_65_b1_redo_sep16_scaffold_19227_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7806..9701)
DNA (1896bp) protein (632aa)
Asparagine synthetase bin=GWA2_Elusimicrobia_66_18 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
asparagine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_b1_redo_sep16_scaffold_19227_11
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9705..10529)
DNA (825bp) protein (275aa)
Glycosyl transferase, family 9 bin=GWC2_Deltaproteobacteria_42_51 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
glycosyl transferase family protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
PLM4_65_b1_redo_sep16_scaffold_19227_12
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10526..10825)
DNA (300bp) protein (100aa)
Glycosyl transferase, family 9 bin=GWC2_Deltaproteobacteria_42_51 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
glycosyl transferase
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
PLM4_65_b1_redo_sep16_scaffold_19227_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(10827..12755)
DNA (1929bp) protein (643aa)
Asparagine synthetase bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
asparagine synthase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_14
Enterobacter sp. R4-368, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12755..13888)
DNA (1134bp) protein (378aa)
hypothetical protein Tax=Leeia oryzae RepID=UPI00035D2447
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN86295.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. R4-368.;"
PLM4_65_b1_redo_sep16_scaffold_19227_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(13888..14586)
DNA (699bp) protein (233aa)
hypothetical protein bin=CNBR_ACIDO species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_19227_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14580..15695)
DNA (1116bp) protein (372aa)
group 1 glycosyl transferase bin=bin3_NC10 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15688..16449)
DNA (762bp) protein (254aa)
Glycosyl transferase family 2 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
glycosyl transferase family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_19227_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16450..17373)
DNA (924bp) protein (308aa)
lipopolysaccharide heptosyltransferase III; K02849 heptosyltransferase III [EC:2.4.-.-] bin=bin3_NC10 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
lipopolysaccharide heptosyltransferase III
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 18 items

View Taxonomy