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PLM4_65_b1_redo_sep16_scaffold_2710

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2710_1
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(1..429)
DNA (429bp) protein (143aa)
RNA methyltransferase, TrmH family, group 3 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4T4_CHLAD
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ACL25560.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM4_65_b1_redo_sep16_scaffold_2710_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(426..2021)
DNA (1596bp) protein (532aa)
cysS; cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Cysteine--tRNA ligase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK15_9BACT
PLM4_65_b1_redo_sep16_scaffold_2710_3
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2189..2743)
DNA (555bp) protein (185aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMC4_DESK7
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
PLM4_65_b1_redo_sep16_scaffold_2710_4
R_Nitrospirae_66_17, Nitrospirae, Bacteria

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comp(2740..3447)
DNA (708bp) protein (236aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B566_DESCC
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_b1_redo_sep16_scaffold_2710_5
CSP1_5_NC10, NC10, Bacteria

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comp(3561..4577)
DNA (1017bp) protein (339aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_2710_6
CSP1_5_NC10, NC10, Bacteria

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comp(4789..5271)
DNA (483bp) protein (161aa)
CarD-like transcriptional regulator bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
CarD-like transcriptional regulator
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_2710_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(5330..6730)
DNA (1401bp) protein (467aa)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
radA; DNA recombination protein RadA
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM4_65_b1_redo_sep16_scaffold_2710_8
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6743..7888)
DNA (1146bp) protein (382aa)
ABC transporter, periplasmic substrate-binding protein, MCE domain-containing bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
ABC transporter substrate-binding lipoprotein
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_b1_redo_sep16_scaffold_2710_9
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7914..8729)
DNA (816bp) protein (272aa)
ABC transporter, ATP-binding protein Tax=Geobacter metallireducens RepID=Q39UV0_GEOMG
ABC transporter {ECO:0000313|EMBL:KIH75885.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
ABC transporter
PLM4_65_b1_redo_sep16_scaffold_2710_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8734..9498)
DNA (765bp) protein (255aa)
hypothetical protein; K02066 putative ABC transport system permease protein bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
ABC transporter
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_2710_11
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9495..11021)
DNA (1527bp) protein (509aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WQQ8_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW14052.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_b1_redo_sep16_scaffold_2710_12
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(11063..12451)
DNA (1389bp) protein (463aa)
replicative DNA helicase, dnaB (EC:3.6.1.-)
Putative replicative DNA helicase, dnaB Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK08_9BACT
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_2710_13
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(12477..12998)
DNA (522bp) protein (174aa)
50S ribosomal protein L9 Tax=Xanthobacteraceae RepID=UPI0003622886
50S ribosomal protein L9
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(13097..14056)
DNA (960bp) protein (320aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK06_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_15
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(14086..14322)
DNA (237bp) protein (79aa)
30S ribosomal protein S18 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK05_9BACT
rpsR; 30S ribosomal protein S18
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14441..14851)
DNA (411bp) protein (137aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_17
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(14854..15240)
DNA (387bp) protein (129aa)
30S ribosomal protein S6 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK03_9BACT
30S ribosomal protein S6
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15244..15852)
DNA (609bp) protein (203aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI00037A2EEB
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_19
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(15853..16539)
DNA (687bp) protein (229aa)
50S ribosomal protein L25 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK01_9BACT
rplY; 50S ribosomal protein L25 (General stress protein CTC)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16722..17672)
DNA (951bp) protein (317aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_trna_1
unknown

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comp(17750..17821)
DNA (72bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_2710_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(17917..18795)
DNA (879bp) protein (293aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] bin=bin3_NC10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2710_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19153..19290)
DNA (138bp) protein (46aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 23 items

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