ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2992

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2992_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

76..903
DNA (828bp) protein (276aa)
transketolase Tax=Desulfurispora thermophila RepID=UPI00036D5857
transketolase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

909..1850
DNA (942bp) protein (314aa)
Transketolase central region bin=GWC2_Chloroflexi_73_18 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
transketolase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

2084..3973
DNA (1890bp) protein (630aa)
aldehyde:ferredoxin oxidoreductase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
aldehyde:ferredoxin oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

4032..4826
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR bin=GWF2_Methylomirabilis_70_14 species=Rhodobacteraceae bacterium HTCC2150 genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_5
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4967..6241
DNA (1275bp) protein (425aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GSU5_9BRAD
Receptor {ECO:0000313|EMBL:KJC33989.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
extracellular ligand-binding receptor
PLM4_65_b1_redo_sep16_scaffold_2992_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6478..7344
DNA (867bp) protein (289aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0002F57152
Inner-membrane translocator {ECO:0000313|EMBL:KJC46791.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
branched-chain amino acid ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_2992_7
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7385..8398
DNA (1014bp) protein (338aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAR2_9BRAD
branched-chain amino acid ABC transporter ATP-binding protein
Tax=RBG_13_Deltaproteobacteria_51_10_curated
PLM4_65_b1_redo_sep16_scaffold_2992_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8395..9129
DNA (735bp) protein (245aa)
Branched-chain amino acid ABC transporter, ATP-binding component (LivG-like) bin=GWF2_Methylomirabilis_70_14 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_b1_redo_sep16_scaffold_2992_9
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9122..9826
DNA (705bp) protein (235aa)
Branched-chain amino acid transport system ATP-binding protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H7D9_9BRAD
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:KJC34334.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ABC transporter-like protein
PLM4_65_b1_redo_sep16_scaffold_2992_10
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9881..11122
DNA (1242bp) protein (414aa)
Uncharacterized protein Tax=Clostridium hylemonae DSM 15053 RepID=C0BZB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74497.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2992_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

11119..11559
DNA (441bp) protein (147aa)
UPF0107 protein Mtc_1230 Tax=Firmicutes bacterium CAG:238 RepID=R6DN34_9FIRM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_12
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(11911..12672)
DNA (762bp) protein (254aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2992_13
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(13088..14257)
DNA (1170bp) protein (390aa)
ABC efflux pump, inner membrane subunit bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
efflux ABC transporter inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_65_b1_redo_sep16_scaffold_2992_14
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(14259..15398)
DNA (1140bp) protein (380aa)
ABC efflux pump, inner membrane subunit Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR79_KORVE
efflux ABC transporter inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_65_b1_redo_sep16_scaffold_2992_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(15395..16120)
DNA (726bp) protein (242aa)
ABC transporter, ATPase subunit; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
ABC transporter ATPase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2992_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16132..17370)
DNA (1239bp) protein (413aa)
Secretion protein HlyD Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR77_KORVE
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:ABF40623.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_2992_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

17894..18208
DNA (315bp) protein (105aa)
Putative ATP-dependent protease Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMV7_9BACT
ATP-dependent protease
Putative ATP-dependent protease {ECO:0000313|EMBL:CBE68057.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2992_18
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18337..18687
DNA (351bp) protein (117aa)
ATP-dependent protease, putative Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AK32_GEOSK
ATP-dependent protease
ATP-dependent protease, putative {ECO:0000313|EMBL:AAR35806.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
Displaying 18 items

View Taxonomy