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PLM4_65_b1_redo_sep16_scaffold_11260

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_11260_1
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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176..409
DNA (234bp) protein (78aa)
Putative transcriptional regulator, CopG family Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G3H2_9DELT
CopG family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_65_b1_redo_sep16_scaffold_11260_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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421..726
DNA (306bp) protein (102aa)
Transcriptional modulator of MazE/toxin, MazF Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G638_9DELT
MazF family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_65_b1_redo_sep16_scaffold_11260_3
RLO_PLX_64_10, Bacteria

Not on your lists

comp(992..1519)
DNA (528bp) protein (176aa)
Hydrogenase maturation protease bin=GWC2_Elusimicrobia_51_8 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hydrogenase maturation protease
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_11260_4
RLO_PLX_64_10, Bacteria

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comp(1516..3039)
DNA (1524bp) protein (508aa)
Nickel-dependent hydrogenase large subunit bin=GWB2_Ignavibacteria_35_12 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
nickel-dependent hydrogenase large subunit
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
group 3c next to heterodisulfide reductase... very odd for a roku Jacob West-Roberts (3/15/22)
PLM4_65_b1_redo_sep16_scaffold_11260_5
RLO_PLX_64_10, Bacteria

Not on your lists

comp(3054..4034)
DNA (981bp) protein (327aa)
NADH ubiquinone oxidoreductase 20 kDa subunit bin=GWA2_Ignavibacteria-rel_35_8 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
NADH ubiquinone oxidoreductase 20 kDa subunit
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_11260_6
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

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comp(4024..4551)
DNA (528bp) protein (176aa)
Methyl-viologen-reducing hydrogenase delta subunit bin=GWC2_Elusimicrobia_51_8 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
methyl-viologen-reducing hydrogenase subunit delta
Tax=GWA2_Elusimicrobia_51_34_curated
PLM4_65_b1_redo_sep16_scaffold_11260_7
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

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comp(4569..6578)
DNA (2010bp) protein (670aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein bin=GWA2_Elusimicrobia_51_34 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
4Fe-4S ferredoxin
Tax=GWA2_Elusimicrobia_51_34_curated
PLM4_65_b1_redo_sep16_scaffold_11260_8
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(6779..7666)
DNA (888bp) protein (296aa)
CoB--CoM heterodisulfide reductase (EC:1.8.98.1)
Heterodisulfide reductase subunit B Tax=uncultured candidate division OP1 bacterium RepID=H5SHC6_9BACT
Tax=RBG_16_KB1_OP1_55_9_curated
PLM4_65_b1_redo_sep16_scaffold_11260_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7680..8273)
DNA (594bp) protein (198aa)
Heterodisulfide reductase subunit C Tax=uncultured candidate division OP1 bacterium RepID=H5SS06_9BACT
heterodisulfide reductase subunit C
Tax=RBG_16_Actinobacteria_68_12_curated
PLM4_65_b1_redo_sep16_scaffold_11260_10
RLO_PLX_64_10, Bacteria

Not on your lists

comp(8972..9874)
DNA (903bp) protein (301aa)
Hydrogenase nickel incorporation protein HypB Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VCS9_9CYAN
Hydrogenase nickel incorporation protein HypB
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_11260_11
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(10011..10211)
DNA (201bp) protein (67aa)
Probable hydrogenase nickel incorporation protein HypA Tax=Oscillatoria acuminata PCC 6304 RepID=K9TT86_9CYAN
Hydrogenase-3 nickel incorporation protein HypA
Probable hydrogenase nickel incorporation protein HypA {ECO:0000256|HAMAP-Rule:MF_00213}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
PLM4_65_b1_redo_sep16_scaffold_11260_12
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(10610..10957)
DNA (348bp) protein (116aa)
GYD family protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U875_9CHLR
GYD family protein
Tax=RBG_16_Chloroflexi_57_11_curated
PLM4_65_b1_redo_sep16_scaffold_11260_13
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

11733..11939
DNA (207bp) protein (69aa)
Glutaredoxin-like domain protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XXX9_9BACT
glutaredoxin-like domain protein
Tax=RBG_16_Zixibacteria_53_22_curated
Displaying 13 items

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