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PLM4_65_b1_redo_sep16_scaffold_7578

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7578_1
Dehalogenimonas lykanthroporepellens, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

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1..222
DNA (222bp) protein (74aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061; / BL-DC-9).;"
PAS/PAC sensor signal transduction histidine kinase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3F0_DEHLB
PAS/PAC sensor signal transduction histidine kinase
PLM4_65_b1_redo_sep16_scaffold_7578_2
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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345..731
DNA (387bp) protein (129aa)
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator bin=RBG_16_Aminicenantes_63_16_plus species=Brevundimonas abyssalis genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
two-component response regulator
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_65_b1_redo_sep16_scaffold_7578_3
R_NC10_66_22, NC10, Bacteria

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737..2410
DNA (1674bp) protein (558aa)
Uncharacterized protein Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BQ40_9NEIS
response regulator receiver sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_4
R_NC10_66_22, NC10, Bacteria

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2466..2834
DNA (369bp) protein (123aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_5
R_NC10_66_22, NC10, Bacteria

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2997..3377
DNA (381bp) protein (127aa)
Two-component response regulator bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
PAS domain S-box
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_6
R_NC10_66_22, NC10, Bacteria

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3525..4469
DNA (945bp) protein (315aa)
pleD; response regulator With diguanylate cyclase (GGDEF) domain protein bin=bin3_NC10 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=bin3_NC10 organism_group=NC10
response regulator receiver modulated diguanylate cyclase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_7
R_NC10_66_22, NC10, Bacteria

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4496..5023
DNA (528bp) protein (176aa)
Response regulator PleD Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SXH6_META2
response regulator PleD [Includes: diguanylate cyclase] (fragment)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_8
R_NC10_66_22, NC10, Bacteria

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5008..5562
DNA (555bp) protein (185aa)
Response regulator receiver Tax=Holophaga foetida DSM 6591 RepID=H1P3G7_9BACT
chitin catabolic cascade sensor histidine kinase ChiS
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_9
R_NC10_66_22, NC10, Bacteria

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6228..6770
DNA (543bp) protein (181aa)
flavin reductase domain-containing protein bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain protein FMN-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_10
R_NC10_66_22, NC10, Bacteria

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6935..8464
DNA (1530bp) protein (510aa)
Periplasmic sensor signal transduction histidine kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML69_9BACT
periplasmic sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_11
R_NC10_66_22, NC10, Bacteria

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8461..9909
DNA (1449bp) protein (483aa)
Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML70_9BACT
atoC; acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_12
R_NC10_66_22, NC10, Bacteria

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9959..10051
DNA (93bp) protein (31aa)
Putative uncharacterized protein Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QDW1_DESB2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_13
R_NC10_66_22, NC10, Bacteria

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10375..10920
DNA (546bp) protein (182aa)
ECF subfamily RNA polymerase sigma-24 subunit bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_14
R_NC10_66_22, NC10, Bacteria

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10925..11467
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QXD3_ISOPI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_15
R_NC10_66_22, NC10, Bacteria

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11591..11854
DNA (264bp) protein (88aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_16
R_NC10_66_22, NC10, Bacteria

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11851..12492
DNA (642bp) protein (214aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_17
R_NC10_66_22, NC10, Bacteria

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12652..13830
DNA (1179bp) protein (393aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7578_18
S_OP1_64_32, KB1, Bacteria

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14039..15139
DNA (1101bp) protein (367aa)
Peptidase M24 Tax=Halobiforma lacisalsi AJ5 RepID=M0LU27_9EURY
Xaa-Pro dipeptidase
Tax=S_OP1_64_32
PLM4_65_b1_redo_sep16_scaffold_7578_19
R_NC10_66_22, NC10, Bacteria

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15234..15989
DNA (756bp) protein (252aa)
rumA; RNA methyltransferase, TrmA family (EC:2.1.1.190) bin=bin3_NC10 species=Gloeobacter kilaueensis genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 19 items

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