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PLM4_65_b1_redo_sep16_scaffold_7726

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7726_1
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(3..296)
DNA (294bp) protein (98aa)
Translation initiation factor 1 (EIF-1/SUI1) bin=GWF2_Methylomirabilis_70_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor SUI1
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7726_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(293..1309)
DNA (1017bp) protein (339aa)
peptide ABC transporter ATP-binding protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626752
oligopeptide/dipeptide ABC transporter ATPase
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7726_3
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(1312..2316)
DNA (1005bp) protein (335aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AQ9_MESSB
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7726_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(2491..3648)
DNA (1158bp) protein (386aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR0_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7726_5
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(3645..4637)
DNA (993bp) protein (331aa)
Binding-protein-dependent transport systems inner membrane component Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR1_MESSB
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7726_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4712..6790)
DNA (2079bp) protein (693aa)
Twin-arginine translocation pathway signal Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AR4_MESSB
twin-arginine translocation pathway signal
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7100..7342)
DNA (243bp) protein (81aa)
Catalytic domain of components of various dehydrogenase complexes Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXV9_THEOJ
catalytic domain of components of various dehydrogenase complexes
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7430..8173)
DNA (744bp) protein (248aa)
Catalytic domain of components of various dehydrogenase complexes Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WUJ0_KYRT2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8258..9244)
DNA (987bp) protein (329aa)
TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta Tax=Desulfurispora thermophila RepID=UPI00035DDEEA
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9246..10211)
DNA (966bp) protein (322aa)
Pyruvate dehydrogenase Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HJR7_THES4
Pyruvate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(10432..10707)
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_12
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(10810..11217)
DNA (408bp) protein (136aa)
formate dehydrogenase accessory protein
Formate dehydrogenase formation protein bin=GWF2_Geobacter_54_21 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(11696..12472)
DNA (777bp) protein (259aa)
Putative formate dehydrogenase family accessory protein (FdhD) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY0_9BACT
formate dehydrogenase family accessory protein (FdhD)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12472..13314)
DNA (843bp) protein (281aa)
Polysulphide reductase NrfD bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Polysulfide reductase NrfD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_7726_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13311..14099)
DNA (789bp) protein (263aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_7726_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14100..16541)
DNA (2442bp) protein (814aa)
Molybdopterin oxidoreductase bin=GWC2_Methylomirabilis_70_24 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
formate dehydrogenase major subunit
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_7726_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16590..17153)
DNA (564bp) protein (188aa)
Formate dehydrogenase (Quinone-dependent) catalytic subunit bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17547..18086)
DNA (540bp) protein (180aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_7726_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18289..19692)
DNA (1404bp) protein (468aa)
Iron-sulfur cluster binding protein bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Iron-sulfur cluster binding protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_7726_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19785..20303)
DNA (519bp) protein (173aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Fe-S osidoreductase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(20596..21330)
DNA (735bp) protein (245aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Burkholderia sp. Ch1-1 RepID=I2IVS7_9BURK
branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21327..22079)
DNA (753bp) protein (251aa)
Branched-chain amino acid transport ATP-binding protein LivG Tax=Caenispirillum salinarum AK4 RepID=K9HKX3_9PROT
branched-chain amino acid ABC transporter,ATP-binding component (LivG-like)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(22072..23922)
DNA (1851bp) protein (617aa)
Branched-chain amino acid ABC-type transport system Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W794_MAGSA
branched chain amino acid ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_7726_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(23980..25113)
DNA (1134bp) protein (378aa)
Branched-chain amino acid ABC transporter,periplasmic substrate-binding component Tax=Azospirillum brasilense Sp245 RepID=G8AEQ6_AZOBR
branched-chain amino acid ABC transporter,periplasmic substrate-binding component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 24 items

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