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PLM4_65_b1_redo_sep16_scaffold_864

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_864_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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3..416
DNA (414bp) protein (138aa)
nadE; NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
NH(3)-dependent NAD(+) synthetase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIV6_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_2
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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943..1332
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0Z4D5_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM4_65_b1_redo_sep16_scaffold_864_3
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1439..2014
DNA (576bp) protein (192aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YEN9_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX29033.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
Plasmid pRiA4b ORF-3-like protein
PLM4_65_b1_redo_sep16_scaffold_864_4

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2222..2380
DNA (159bp) protein (53aa)
Marine sediment metagenome DNA, contig: S12H4_S02625 {ECO:0000313|EMBL:GAI97827.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_b1_redo_sep16_scaffold_864_5
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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2395..3129
DNA (735bp) protein (245aa)
Uncharacterized protein Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZXD9_DESOH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_65_b1_redo_sep16_scaffold_864_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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3145..3858
DNA (714bp) protein (238aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN73_9BACT
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:CBE70215.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4072..5208
DNA (1137bp) protein (379aa)
ald; Alanine dehydrogenase (Stage V sporulation protein N) (EC:1.4.1.1)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183, ECO:0000313|EMBL:CBE70214.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Alanine dehydrogenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN72_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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5227..6033
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN71_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70213.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_9
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6056..7267
DNA (1212bp) protein (404aa)
PUA domain containing protein Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNK3_DESK7
PUA domain-containing protein
PUA domain containing protein {ECO:0000313|EMBL:AEG15812.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
PLM4_65_b1_redo_sep16_scaffold_864_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7368..7709)
DNA (342bp) protein (114aa)
Preprotein translocase (YajC) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU9_9BACT
yajC; preprotein translocase (YajC)
Preprotein translocase (YajC) {ECO:0000313|EMBL:CBE69456.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7736..8896)
DNA (1161bp) protein (387aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Queuine tRNA-ribosyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU8_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8916..10028)
DNA (1113bp) protein (371aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:2.4.2.29)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU7_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10063..10287)
DNA (225bp) protein (75aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69453.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10307..11377)
DNA (1071bp) protein (357aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Holliday junction ATP-dependent DNA helicase RuvB Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU5_9BACT
ruvB; Holliday junction DNA helicase ruvB
PLM4_65_b1_redo_sep16_scaffold_864_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11374..12000)
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Holliday junction ATP-dependent DNA helicase RuvA Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU4_9BACT
ruvA; Holliday junction DNA helicase ruvA
PLM4_65_b1_redo_sep16_scaffold_864_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11997..12497)
DNA (501bp) protein (167aa)
ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Crossover junction endodeoxyribonuclease RuvC Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU3_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(12530..13279)
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein DAMO_2401 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIU2_9BACT
hypothetical protein
Probable transcriptional regulatory protein DAMO_2401 {ECO:0000256|HAMAP-Rule:MF_00693}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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13584..14831
DNA (1248bp) protein (416aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK42_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69664.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

14850..15794
DNA (945bp) protein (315aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK43_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69665.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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15834..18044
DNA (2211bp) protein (737aa)
Histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBE69666.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Histidine kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK44_9BACT
PLM4_65_b1_redo_sep16_scaffold_864_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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18041..18412
DNA (372bp) protein (124aa)
Putative response regulator in two-component regulatory system (CheY-like protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK45_9BACT
response regulator in two-component regulatory system (CheY-like protein)
Putative response regulator in two-component regulatory system (CheY-like protein) {ECO:0000313|EMBL:CBE69667.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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18725..20011
DNA (1287bp) protein (429aa)
Putative DNA-binding response regulator in two-component system Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK46_9BACT
yfhA; DNA-binding response regulator in two-component system
Putative DNA-binding response regulator in two-component system {ECO:0000313|EMBL:CBE69668.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_864_23
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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21140..22474
DNA (1335bp) protein (445aa)
Adenylate/guanylate cyclase with integral membrane sensor Tax=Desulfococcus multivorans DSM 2059 RepID=S7U755_DESML
family 3 adenylate cyclase
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_65_b1_redo_sep16_scaffold_864_24
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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22471..23466
DNA (996bp) protein (332aa)
polysaccharide deacetylase Tax=Desulfospira joergensenii RepID=UPI0003B662CD
xylanase/chitin deacetilase
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_65_b1_redo_sep16_scaffold_864_25
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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23470..24462
DNA (993bp) protein (331aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM4_65_b1_redo_sep16_scaffold_864_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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24771..25331
DNA (561bp) protein (187aa)
Transcriptional regulator, TetR family bin=GWC2_Methylomirabilis_70_16 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TetR family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_864_27
R_NC10_66_22, NC10, Bacteria

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25477..25746
DNA (270bp) protein (90aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_864_28
R_NC10_66_22, NC10, Bacteria

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26186..26440
DNA (255bp) protein (85aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_864_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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26583..27545
DNA (963bp) protein (321aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Quinolinate synthase A Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK49_9BACT
nadA; quinolinate synthetase A
PLM4_65_b1_redo_sep16_scaffold_864_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

27570..28433
DNA (864bp) protein (288aa)
nadC; quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase) (EC:2.4.2.19)
Quinolinate phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase) {ECO:0000313|EMBL:CBE69672.1}; EC=2.4.2.19 {ECO:0000313|EMBL:CBE69672.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Quinolinate phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK50_9BACT
Displaying items 1-30 of 35 in total

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