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PLM4_65_b1_redo_sep16_scaffold_1012

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1012_1
R_NC10_66_22, NC10, Bacteria

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1431..2081
DNA (651bp) protein (217aa)
Transcriptional regulator, TetR family bin=GWF2_Methylomirabilis_70_14 species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

2050..2832
DNA (783bp) protein (261aa)
CaiD; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037F8D47
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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2885..4024
DNA (1140bp) protein (380aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:CBE67718.1}; EC=1.3.99.10 {ECO:0000313|EMBL:CBE67718.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
acyl-CoA dehydrogenase Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037C2028
PLM4_65_b1_redo_sep16_scaffold_1012_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4168..4974
DNA (807bp) protein (269aa)
Protein fixA electron transfer flavoprotein beta-subunit (Beta-ETF) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKS2_9BACT
fixA; protein fixA; electron transfer flavoprotein beta-subunit (Beta-ETF)
Protein fixA electron transfer flavoprotein beta-subunit (Beta-ETF) {ECO:0000313|EMBL:CBE67719.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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5153..6142
DNA (990bp) protein (330aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000364A73B
fixB; protein FixB; electron transfer flavoprotein alpha chain
Protein FixB electron transfer flavoprotein alpha chain {ECO:0000313|EMBL:CBE67720.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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6150..8132
DNA (1983bp) protein (661aa)
Putative iron-sulfur cluster-binding protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKS5_9BACT
iron-sulfur cluster-binding protein
Putative iron-sulfur cluster-binding protein {ECO:0000313|EMBL:CBE67722.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_7
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8129..8566
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Sphingomonas sp. LH128 RepID=J8VTF7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31219.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1012_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

8699..10393
DNA (1695bp) protein (565aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
methylmalonyl-CoA mutase (EC:5.4.99.2)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

10461..10874
DNA (414bp) protein (138aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] bin=bin3_NC10 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
methylmalonyl-CoA mutase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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11003..12313
DNA (1311bp) protein (437aa)
Sterol carrier protein x/sterol carrier protein 2 related protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKS6_9BACT
Sterol carrier protein x/sterol carrier protein 2 related protein
Sterol carrier protein x/sterol carrier protein 2 related protein {ECO:0000313|EMBL:CBE67725.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

12348..12914
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKS7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67726.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

12989..14140
DNA (1152bp) protein (384aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:CBE67665.1}; EC=1.3.99.10 {ECO:0000313|EMBL:CBE67665.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Isovaleryl-CoA dehydrogenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKL8_9BACT
PLM4_65_b1_redo_sep16_scaffold_1012_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

14387..15325
DNA (939bp) protein (313aa)
LAO/AO transporter ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] bin=bin3_NC10 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
LAO/AO transport system ATPase, partial, 5' end
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

15338..16309
DNA (972bp) protein (324aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
3-oxoacid CoA-transferase, alpha subunit {ECO:0000313|EMBL:CBE67671.1}; EC=2.8.3.5 {ECO:0000313|EMBL:CBE67671.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-oxoacid CoA-transferase, alpha subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKM4_9BACT
PLM4_65_b1_redo_sep16_scaffold_1012_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

16339..17103
DNA (765bp) protein (255aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKM5_9BACT
AtoA; acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit {ECO:0000313|EMBL:CBE67672.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

17178..18812
DNA (1635bp) protein (545aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

18906..19712
DNA (807bp) protein (269aa)
ABC transporter, ATP-binding protein Tax=delta proteobacterium NaphS2 RepID=D8F8X9_9DELT
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_18
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19696..21645
DNA (1950bp) protein (650aa)
AMP-forming long-chain acyl-CoA synthetase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7M0_DESTA
AMP-forming long-chain acyl-CoA synthetase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_65_b1_redo_sep16_scaffold_1012_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

21818..22702
DNA (885bp) protein (295aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7L9_DESTA
amino acid/amide ABC transporter membrane protein 1, HAAT family
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_20
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22808..24049
DNA (1242bp) protein (414aa)
Hypothetical membrane protein Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XQI8_DESMR
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH75353.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
PLM4_65_b1_redo_sep16_scaffold_1012_21
unknown

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24191..27565
DNA (3375bp) protein (1125aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1012_22
unknown

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comp(27924..28076)
DNA (153bp) protein (51aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1012_23
R_NC10_66_22, NC10, Bacteria

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28211..29272
DNA (1062bp) protein (354aa)
Amino acid or sugar ABC transport system, permease protein Tax=delta proteobacterium NaphS2 RepID=D8F8X6_9DELT
ABC-type branched-chain amino acid transport system, permease component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

29525..30775
DNA (1251bp) protein (417aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7L7_DESTA
amino acid/amide ABC transporter substrate-binding protein, HAAT family
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

30806..31600
DNA (795bp) protein (265aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7L6_DESTA
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_1012_26
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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31632..32192
DNA (561bp) protein (187aa)
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM4_65_b1_redo_sep16_scaffold_1012_27
R_NC10_66_22, NC10, Bacteria

Not on your lists

32455..33684
DNA (1230bp) protein (410aa)
Coenzyme F390 synthetase bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1012_28
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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33914..35917
DNA (2004bp) protein (668aa)
Multimodular transpeptidase-transglycosylase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKR4_9BACT
Multimodular transpeptidase-transglycosylase
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:CBE67711.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1012_29
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36075..36992
DNA (918bp) protein (306aa)
3-oxoadipate CoA-transferase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TH87_9CHLR
hypothetical protein
Tax=CG_Syntroph_01
PLM4_65_b1_redo_sep16_scaffold_1012_30
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37072..37845
DNA (774bp) protein (258aa)
Coenzyme A transferase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TH88_9CHLR
coenzyme A transferase
Tax=CG_Syntroph_01
Displaying items 1-30 of 32 in total

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