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PLM4_65_b1_redo_sep16_scaffold_2690

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2690_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..184)
DNA (183bp) protein (61aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IR10_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:KCZ73441.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2690_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(268..603)
DNA (336bp) protein (112aa)
Transcriptional regulators, TraR/DksA family Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ60_9BACT
transcriptional regulators, TraR/DksA family
Transcriptional regulators, TraR/DksA family {ECO:0000313|EMBL:CBE67425.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(1275..2453)
DNA (1179bp) protein (393aa)
Putative Nucleotidyl transferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEJ9_9BACT
Nucleotidyl transferase
Putative Nucleotidyl transferase {ECO:0000313|EMBL:CBE68176.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4122..5912)
DNA (1791bp) protein (597aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_2690_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

6286..6816
DNA (531bp) protein (177aa)
hypothetical protein bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM4_65_b1_redo_sep16_scaffold_2690_6
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7252..7584)
DNA (333bp) protein (111aa)
Phospholipase D/transphosphatidylase Tax=Acidithiobacillus caldus RepID=F9ZS21_ACICS
putative endonuclease protein
Phospholipase D/transphosphatidylase {ECO:0000313|EMBL:AEK58830.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
PLM4_65_b1_redo_sep16_scaffold_2690_7
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7547..8779)
DNA (1233bp) protein (411aa)
Isoprenylcysteine carboxyl methyltransferase bin=GWB2_Nitrospirae_rel_47_37 species=Alcanivorax hongdengensis genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Isoprenylcysteine carboxyl methyltransferase
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_65_b1_redo_sep16_scaffold_2690_8
unknown

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8873..9136
DNA (264bp) protein (88aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2690_9
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9214..10071)
DNA (858bp) protein (286aa)
Putative uncharacterized protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AYX2_RUBXD
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
PLM4_65_b1_redo_sep16_scaffold_2690_10
unknown

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comp(10342..10683)
DNA (342bp) protein (114aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2690_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10849..11088)
DNA (240bp) protein (80aa)
UspA Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMU4_9BACT
UspA protein
UspA {ECO:0000313|EMBL:CBE68044.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11088..11357)
DNA (270bp) protein (90aa)
UspA Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMU4_9BACT
UspA protein
UspA {ECO:0000313|EMBL:CBE68044.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_13
unknown

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comp(11388..11930)
DNA (543bp) protein (181aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2690_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(12460..12663)
DNA (204bp) protein (68aa)
Cold shock protein, DNA binding Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIA2_9BACT
cspA; Cold shock protein, DNA binding
Cold shock protein, DNA binding {ECO:0000313|EMBL:CBE67252.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_trna_1
unknown

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comp(13419..13489)
DNA (71bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_2690_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(13677..14180)
DNA (504bp) protein (168aa)
Transcription elongation factor greA (Transcript cleavage factor greA) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFS8_9BACT
greA; transcription elongation factor greA (Transcript cleavage factor greA)
Transcription elongation factor greA (Transcript cleavage factor greA) {ECO:0000313|EMBL:CBE68609.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(14177..15565)
DNA (1389bp) protein (463aa)
gltX; glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000313|EMBL:CBE68610.1};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Glutamate--tRNA ligase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFS9_9BACT
PLM4_65_b1_redo_sep16_scaffold_2690_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(15659..15838)
DNA (180bp) protein (60aa)
UPF0434 protein DAMO_1551 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT0_9BACT
hypothetical protein
UPF0434 protein DAMO_1551 {ECO:0000256|HAMAP-Rule:MF_01187}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2690_18
CSP1_5_NC10, NC10, Bacteria

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comp(15951..16841)
DNA (891bp) protein (297aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase bin=bin3_NC10 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
dihydrodipicolinate synthase/N-acetylneuraminate lyase
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_2690_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16889..18388)
DNA (1500bp) protein (500aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:AEB82645.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AEB82645.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein Tax=Alicycliphilus denitrificans RepID=E8TTU2_ALIDB
ABC transporter
PLM4_65_b1_redo_sep16_scaffold_2690_20
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(18388..19341)
DNA (954bp) protein (318aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family bin=GWC2_Syntrophus__56_31 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
amino acid/amide ABC transporter membrane protein 2, HAAT family
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_65_b1_redo_sep16_scaffold_2690_21
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19491..19742
DNA (252bp) protein (84aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
Displaying 22 items

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