ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_23563

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_23563_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists


2..298
DNA (297bp) protein (99aa)
30S ribosomal protein S9 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
30S ribosomal protein S9
PLM4_65_b1_redo_sep16_scaffold_23563_2
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


358..1119
DNA (762bp) protein (254aa)
30S ribosomal protein S2 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037F07A6
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM4_65_b1_redo_sep16_scaffold_23563_3
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

1193..2080
DNA (888bp) protein (296aa)
Elongation factor Ts Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZC8_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
tsf; translation elongation factor Ts
PLM4_65_b1_redo_sep16_scaffold_23563_4
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2138..2872
DNA (735bp) protein (245aa)
Uridylate kinase bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
pyrH; uridylate kinase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_65_b1_redo_sep16_scaffold_23563_5
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

2869..3423
DNA (555bp) protein (185aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000371AA63
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
ribosome-recycling factor
PLM4_65_b1_redo_sep16_scaffold_23563_6
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

3471..4154
DNA (684bp) protein (228aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F139_CONWI
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM4_65_b1_redo_sep16_scaffold_23563_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

4151..4624
DNA (474bp) protein (158aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Geobacter sp. (strain M18) RepID=E8WI17_GEOS8
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_23563_8
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4621..5349
DNA (729bp) protein (243aa)
RNA methyltransferase, TrmH family, group 3 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X1H8_ACISM
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ADW70213.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM4_65_b1_redo_sep16_scaffold_23563_trna_1
unknown

Not on your lists

5544..5615
DNA (72bp)
transferRNA Thr
PLM4_65_b1_redo_sep16_scaffold_23563_trna_2
unknown

Not on your lists

5671..5754
DNA (84bp)
transferRNA Tyr
PLM4_65_b1_redo_sep16_scaffold_23563_trna_3
unknown

Not on your lists

5797..5868
DNA (72bp)
transferRNA Gly
PLM4_65_b1_redo_sep16_scaffold_23563_trna_4
unknown

Not on your lists

5897..5969
DNA (73bp)
transferRNA Thr
PLM4_65_b1_redo_sep16_scaffold_23563_9
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


6051..6188
DNA (138bp) protein (46aa)
Elongation factor Tu Tax=Enterococcus sulfureus RepID=S0PCS0_9ENTE
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis 06-MB-DW-09.;"
Displaying 13 items

View Taxonomy