ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3198

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3198_1
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(2..139)
DNA (138bp) protein (46aa)
Elongation factor Tu Tax=Enterococcus sulfureus RepID=S0PCS0_9ENTE
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis 06-MB-DW-09.;"
PLM4_65_b1_redo_sep16_scaffold_3198_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(154..2280)
DNA (2127bp) protein (709aa)
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
fusA-3; translation elongation factor G; K02355 elongation factor G bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fusA-3; elongation factor G
PLM4_65_b1_redo_sep16_scaffold_3198_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists


comp(2319..2789)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08ZK1_STIAD
rpsG; 30S ribosomal protein S7
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3198_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(2800..3174)
DNA (375bp) protein (125aa)
30S ribosomal protein S12 Tax=Koribacter versatilis (strain Ellin345) RepID=RS12_KORVE
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsL; 30S ribosomal protein S12
PLM4_65_b1_redo_sep16_scaffold_3198_5
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3425..4864)
DNA (1440bp) protein (480aa)
Uncharacterized protein Tax=Flavobacterium enshiense DK69 RepID=V6S247_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO95722.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3198_6
unknown

Not on your lists

comp(4861..5541)
DNA (681bp) protein (227aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3198_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5634..9821)
DNA (4188bp) protein (1396aa)
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3Y4_ACIC5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_b1_redo_sep16_scaffold_3198_8
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(9899..14134)
DNA (4236bp) protein (1412aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta Tax=Solibacter usitatus (strain Ellin6076) RepID=RPOB_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_65_b1_redo_sep16_scaffold_3198_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists


comp(14276..14659)
DNA (384bp) protein (128aa)
50S ribosomal protein L7/L12 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2Z4_MAHA5
50S ribosomal protein L7/L12
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3198_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


comp(14686..15231)
DNA (546bp) protein (182aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L10
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3198_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(15234..15929)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 Tax=Holophaga foetida DSM 6591 RepID=H1P5L7_9BACT
rplA; 50S ribosomal protein L1
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3198_12
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16052..16474)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 Tax=Pelobacter propionicus (strain DSM 2379) RepID=RL11_PELPD
rplK; 50S ribosomal protein L11
Tax=CG_Desulfob_01
PLM4_65_b1_redo_sep16_scaffold_3198_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(16490..17035)
DNA (546bp) protein (182aa)
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription antitermination protein nusG
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3198_14
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17032..17256)
DNA (225bp) protein (75aa)
Protein translocase subunit SecE Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NCP3_DESAR
Preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
PLM4_65_b1_redo_sep16_scaffold_3198_trna_1
unknown

Not on your lists

comp(17303..17376)
DNA (74bp)
transferRNA Trp
PLM4_65_b1_redo_sep16_scaffold_3198_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


comp(17387..17539)
DNA (153bp) protein (51aa)
50S ribosomal protein L33 Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI00036A35CC
rpmG; 50S ribosomal protein L33
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3198_16
unknown

Not on your lists

comp(17623..17700)
DNA (78bp) protein (26aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Displaying 17 items

View Taxonomy