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PLM4_65_b1_redo_sep16_scaffold_3490

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3490_1
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..308
DNA (306bp) protein (102aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI000378405C
acetate kinase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
PLM4_65_b1_redo_sep16_scaffold_3490_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(318..1013)
DNA (696bp) protein (232aa)
Pirin domain protein bin=GWC2_Methylomirabilis_70_16 species=Chroococcidiopsis thermalis genus=Chroococcidiopsis taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pirin domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_3490_trna_1
unknown

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comp(1183..1256)
DNA (74bp)
transferRNA Ala
PLM4_65_b1_redo_sep16_scaffold_3490_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1710..2885
DNA (1176bp) protein (392aa)
Na+/H+-exchanging protein bin=GWA2_Elusimicrobia_69_24 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Kef-type K+ transport system membrane protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3490_4
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2882..4153)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=beta proteobacterium L13 RepID=UPI0003767799
ribonuclease BN
UPF0761 membrane protein NH8B_3712 {ECO:0000256|HAMAP-Rule:MF_00672}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
PLM4_65_b1_redo_sep16_scaffold_3490_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4184..5626)
DNA (1443bp) protein (481aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UET7_MYXSD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_3490_6
unknown

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5756..6028
DNA (273bp) protein (91aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3490_7
unknown

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6067..6294
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3490_8
Bacillus pseudofirmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6486..7451
DNA (966bp) protein (322aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus pseudofirmus (strain OF4).;"
Selenide, water dikinase Tax=Bacillus pseudofirmus (strain OF4) RepID=D3FTS1_BACPE
selD; selenide, water dikinase
PLM4_65_b1_redo_sep16_scaffold_3490_9
unknown

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7448..7732
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3490_10
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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7729..8562
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AUB2_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ90567.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM4_65_b1_redo_sep16_scaffold_3490_11
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(8660..9610)
DNA (951bp) protein (317aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_65_b1_redo_sep16_scaffold_3490_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9687..10802
DNA (1116bp) protein (372aa)
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Aminomethyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLA8_9BACT
PLM4_65_b1_redo_sep16_scaffold_3490_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10812..11204
DNA (393bp) protein (131aa)
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Glycine cleavage system H protein bin=GWC2_Deltaproteobacteria_42_51 species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
glycine cleavage system H protein
PLM4_65_b1_redo_sep16_scaffold_3490_14
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11201..12544
DNA (1344bp) protein (448aa)
glycine dehydrogenase (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 bin=GWC2_Pelobacter_58_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_b1_redo_sep16_scaffold_3490_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

12541..14058
DNA (1518bp) protein (506aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
glycine dehydrogenase subunit 2; K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) (EC:1.4.4.2)
PLM4_65_b1_redo_sep16_scaffold_3490_16
unknown

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14165..14392
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3490_17
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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14389..16182
DNA (1794bp) protein (598aa)
DegV family protein Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BSA4_DESAD
degV family protein
Tax=RBG_16_Caldithrix_48_16_curated
PLM4_65_b1_redo_sep16_scaffold_3490_18
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16272..16688
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6RCE6_NOCCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCF63886.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
PLM4_65_b1_redo_sep16_scaffold_3490_19
unknown

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comp(16759..16920)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 20 items

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