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PLM4_65_b1_redo_sep16_scaffold_731

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_731_1
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(3..1055)
DNA (1053bp) protein (351aa)
Putative alternative thymidylate synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHD9_CHLTF
putative alternative thymidylate synthase
Putative alternative thymidylate synthase {ECO:0000313|EMBL:AEP12202.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_731_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1164..2393
DNA (1230bp) protein (410aa)
Cysteine desulfurase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=ISCS_ANADE
cysteine desulfurase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_731_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2475..5849
DNA (3375bp) protein (1125aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription-repair coupling factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_731_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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5929..6924
DNA (996bp) protein (332aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_731_5
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6939..7793
DNA (855bp) protein (285aa)
HhH-GPD family protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8E9_ANADF
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:ABS24995.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_65_b1_redo_sep16_scaffold_731_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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8105..8551
DNA (447bp) protein (149aa)
MraZ family transcriptional regulator Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B36E7F
MraZ protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_731_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

8825..9547
DNA (723bp) protein (241aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000255|HAMAP-Rule:MF_01007}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Ribosomal RNA small subunit methyltransferase H Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=RSMH_THERP
PLM4_65_b1_redo_sep16_scaffold_731_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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9544..9903
DNA (360bp) protein (120aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003631589
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_65_b1_redo_sep16_scaffold_731_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

9900..11966
DNA (2067bp) protein (689aa)
Peptidoglycan transglycosylase and transpeptidase FtsI bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
ftsI; peptidoglycan transglycosylase and transpeptidase FtsI
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_731_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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11963..13426
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q3N8_9FIRM
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_b1_redo_sep16_scaffold_731_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

13446..14831
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEL4_THEPS
PLM4_65_b1_redo_sep16_scaffold_731_12
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14832..15917
DNA (1086bp) protein (362aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CCN5_DESTA
PLM4_65_b1_redo_sep16_scaffold_731_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

15914..17320
DNA (1407bp) protein (469aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_731_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

17310..18419
DNA (1110bp) protein (370aa)
stage V sporulation protein E; K03588 cell division protein FtsW bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
cell cycle protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_731_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

18450..19511
DNA (1062bp) protein (354aa)
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
N-acetylglucosaminyl transferase Tax=mine drainage metagenome RepID=E6QKN6_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_731_16
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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19508..20914
DNA (1407bp) protein (469aa)
murC; UDP-N-acetylmuramate-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
UDP-N-acetylmuramate/alanine ligase
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_65_b1_redo_sep16_scaffold_731_17
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20901..21719
DNA (819bp) protein (273aa)
Cell division protein FtsQ Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8ML58_CORCM
ftsQ; cell division protein FtsQ
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_b1_redo_sep16_scaffold_731_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21803..23026
DNA (1224bp) protein (408aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00036D19C2
cell division protein FtsA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_731_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23092..24255
DNA (1164bp) protein (388aa)
Cell division protein FtsZ Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KN11_9FIRM
cell division protein FtsZ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_731_20
unknown

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comp(24358..24723)
DNA (366bp) protein (122aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_731_trna_3
unknown

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comp(24951..25022)
DNA (72bp)
transferRNA Glu
PLM4_65_b1_redo_sep16_scaffold_731_21
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(25150..26478)
DNA (1329bp) protein (443aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI0003714487
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_731_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(26486..27415)
DNA (930bp) protein (310aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000380643C
ABC-type uncharacterized transport system, ATPase component {ECO:0000313|EMBL:CDM65105.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
efflux ABC transporter ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_731_trna_2
unknown

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comp(27481..27567)
DNA (87bp)
transferRNA Ser
PLM4_65_b1_redo_sep16_scaffold_731_23
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27584..28042)
DNA (459bp) protein (153aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
CMP/dCMP deaminase zinc-binding Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKA3_9FIRM
CMP/dCMP deaminase zinc-binding protein
PLM4_65_b1_redo_sep16_scaffold_731_trna_1
unknown

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28137..28210
DNA (74bp)
transferRNA Arg
PLM4_65_b1_redo_sep16_scaffold_731_24
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

28309..29580
DNA (1272bp) protein (424aa)
secretion protein HlyD; K02005 HlyD family secretion protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
secretion protein HlyD
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_731_25
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

29577..30791
DNA (1215bp) protein (405aa)
ABC efflux pump, inner membrane subunit bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
efflux ABC transporter inner membrane protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_731_26
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

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30816..32090
DNA (1275bp) protein (425aa)
ABC efflux pump, inner membrane subunit Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LHM0_9BACT
efflux ABC transporter inner membrane protein
Tax=RBG_16_Zixibacteria_40_9_curated
PLM4_65_b1_redo_sep16_scaffold_731_27
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

32153..33436
DNA (1284bp) protein (428aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
antimicrobial peptide ABC transporter permease
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
Displaying items 1-30 of 31 in total

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