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PLM4_65_b1_redo_sep16_scaffold_906

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_906_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46..1491
DNA (1446bp) protein (482aa)
FeS assembly protein SufB Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWY7_NITHN
FeS assembly protein SufB
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_906_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

1491..2279
DNA (789bp) protein (263aa)
FeS assembly ATPase SufC Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWY8_NITHN
FeS assembly ATPase SufC
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_906_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

2279..3595
DNA (1317bp) protein (439aa)
SufD, needed for fhuF Fe-S center production/stability bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter permease
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM4_65_b1_redo_sep16_scaffold_906_4
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3592..4860
DNA (1269bp) protein (423aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00036946A4
SufS subfamily cysteine desulfurase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_65_b1_redo_sep16_scaffold_906_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

4860..5351
DNA (492bp) protein (164aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
iscU; SUF system FeS assembly protein, NifU family
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_906_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5354..5899
DNA (546bp) protein (182aa)
hypothetical protein bin=bin9_gal15 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_906_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

5913..6410
DNA (498bp) protein (166aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P16_SOLUE
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABJ88604.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_906_8
unknown

Not on your lists

6407..6784
DNA (378bp) protein (126aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_906_9
Paraglaciecola agarilytica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6832..8682)
DNA (1851bp) protein (617aa)
Uncharacterized protein bin=CD_OP8_4m species=unknown genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Uncharacterized protein {ECO:0000313|EMBL:GAC04747.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola agarilytica NO2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_906_10
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

8897..10366
DNA (1470bp) protein (490aa)
glgA; glycogen synthase (EC:2.4.1.21)
Glycogen synthase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=CG_Anaero_03
PLM4_65_b1_redo_sep16_scaffold_906_11
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

10350..11681
DNA (1332bp) protein (444aa)
Glucose-1-phosphate adenylyltransferase bin=GWB2_Chloroflexi_49_20 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
glucose-1-phosphate adenylyltransferase
Tax=RBG_16_Chloroflexi_57_11_curated
PLM4_65_b1_redo_sep16_scaffold_906_12
unknown

Not on your lists

comp(11694..11891)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_906_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12122..12547)
DNA (426bp) protein (142aa)
cytosine deaminase (EC:3.5.4.1)
Cytosine deaminase Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPV1_PSEUU
Cytosine deaminase {ECO:0000313|EMBL:AKC86476.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
PLM4_65_b1_redo_sep16_scaffold_906_14
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(12585..13715)
DNA (1131bp) protein (377aa)
Stearoyl-CoA 9-desaturase Tax=Microbulbifer agarilyticus RepID=UPI0002558A55
Fatty acid desaturase, family 1
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
PLM4_65_b1_redo_sep16_scaffold_906_15
unknown

Not on your lists

comp(13733..14032)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_906_16
RifOxyA12_full_Desulfobacula_46_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14089..14391)
DNA (303bp) protein (101aa)
RNP-1 like RNA-binding protein Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q313C0_DESDG
RNP-1 like RNA-binding protein
Tax=RifOxyA12_full_Desulfobacula_46_16_curated
PLM4_65_b1_redo_sep16_scaffold_906_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14675..16183
DNA (1509bp) protein (503aa)
methylmalonate-semialdehyde dehydrogenase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
methylmalonate-semialdehyde dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_906_18
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16349..17221
DNA (873bp) protein (291aa)
B-alanine synthase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q097R1_STIAD
N-carbamoylputrescine amidase {ECO:0000313|EMBL:EYF01161.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
beta-alanine synthase
PLM4_65_b1_redo_sep16_scaffold_906_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

17218..18624
DNA (1407bp) protein (469aa)
Dihydropyrimidinase Tax=Sulfobacillus acidophilus RepID=F8I3A7_SULAT
dihydropyrimidinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_906_20
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18937..20274
DNA (1338bp) protein (446aa)
Aminotransferase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FRM2_STIAD bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aminotransferase
Aminotransferase {ECO:0000313|EMBL:ADO75799.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM4_65_b1_redo_sep16_scaffold_906_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

20288..21412
DNA (1125bp) protein (375aa)
dihydropyrimidine dehydrogenase (EC:1.3.1.1); K00207 dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] bin=bin8_Chloro species=Oceanicola sp. S124 genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
dihydropyrimidine dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_906_22
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21438..21605
DNA (168bp) protein (56aa)
Peptidase S9, prolyl oligopeptidase active site region Tax=Cystobacter fuscus DSM 2262 RepID=S9PMR7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFL37127.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
peptidase, s9 prolyl oligopeptidase
PLM4_65_b1_redo_sep16_scaffold_906_23
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21610..22104)
DNA (495bp) protein (165aa)
Zn-ribbon protein possibly nucleic acid-binding Tax=root RepID=R6VF21_9BACT
Zn-ribbon protein possibly nucleic acid-binding {ECO:0000313|EMBL:CDC96918.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
Zn-ribbon protein, possibly nucleic acid-binding
PLM4_65_b1_redo_sep16_scaffold_906_24
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22101..22814)
DNA (714bp) protein (238aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LK15_HALO1
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ACY18522.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_906_25
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

22905..23600
DNA (696bp) protein (232aa)
ptsN1; PtsN1 (EC:2.7.1.69)
PTS IIA-like nitrogen-regulatory protein PtsN bin=GWC2_Pelobacter_58_13 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_65_b1_redo_sep16_scaffold_906_26
RLO_PLX_64_10, Bacteria

Not on your lists

23665..25842
DNA (2178bp) protein (726aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJT9_HALO1
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_906_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

25839..26294
DNA (456bp) protein (152aa)
(2Fe-2S)-binding domain protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJT8_HALO1
(2Fe-2S)-binding domain-containing protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_906_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

26521..27282
DNA (762bp) protein (254aa)
Molybdopterin dehydrogenase FAD-binding protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJT7_HALO1
molybdopterin dehydrogenase FAD-binding protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_906_29
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

27312..28625
DNA (1314bp) protein (438aa)
Pyruvate/Phosphoenolpyruvate kinase domain protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08NX3_STIAD
pyruvate/phosphoenolpyruvate kinase domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
PLM4_65_b1_redo_sep16_scaffold_906_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(28774..30816)
DNA (2043bp) protein (681aa)
Drug resistance transporter, EmrB/QacA subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEZ2_CONWI
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AHG89507.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 33 in total

View Taxonomy