ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_5835

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5835_1
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1085
DNA (1083bp) protein (361aa)
Aminotransferase class I and II Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LKK7_HALO1
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ACY15055.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_5835_2
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1076..1846
DNA (771bp) protein (257aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LKK6_HALO1
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Putative amidohydrolase {ECO:0000313|EMBL:KIG16837.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
PLM4_65_b1_redo_sep16_scaffold_5835_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(1871..2863)
DNA (993bp) protein (331aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_5835_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3571..4800)
DNA (1230bp) protein (410aa)
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:CDM66702.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDM66702.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aspartate/tyrosine/aromatic aminotransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJI7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_5835_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4820..6367)
DNA (1548bp) protein (516aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:CDM64928.1}; EC=1.2.1.88 {ECO:0000313|EMBL:CDM64928.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
1-pyrroline-5 carboxylate dehydrogenase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67KS1_SYMTH
PLM4_65_b1_redo_sep16_scaffold_5835_6
unknown

Not on your lists

comp(6409..7152)
DNA (744bp) protein (248aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5835_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7149..8540)
DNA (1392bp) protein (464aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036E062A
Amino acid permease {ECO:0000313|EMBL:GAO56766.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amino acid permease
PLM4_65_b1_redo_sep16_scaffold_5835_8
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8607..9254
DNA (648bp) protein (216aa)
Putative methyltransferase Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z2D1_METPS
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:BAI62853.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
PLM4_65_b1_redo_sep16_scaffold_5835_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9417..10343
DNA (927bp) protein (309aa)
Cysteine synthase {ECO:0000313|EMBL:CDM66171.1}; EC=2.5.1.47 {ECO:0000313|EMBL:CDM66171.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cysteine synthase (EC:2.5.1.47)
Cysteine synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKA1_CHLTF
PLM4_65_b1_redo_sep16_scaffold_5835_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10340..10762
DNA (423bp) protein (141aa)
Mov34/MPN/PAD-1 family protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHM7_RHOMR
Mov34/MPN/PAD-1 family protein
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:AEN73037.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_5835_11
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

10772..12214
DNA (1443bp) protein (481aa)
dinucleotide-utilizing protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM4_65_b1_redo_sep16_scaffold_5835_12
unknown

Not on your lists

12215..12439
DNA (225bp) protein (75aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5835_13
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(12452..12820)
DNA (369bp) protein (123aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Uncharacterized protein {ECO:0000313|EMBL:KKW01552.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Putative pterin-4-alpha-carbinolamine dehydratase bin=GWC2_Deltaproteobacteria_66_88 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_5835_14
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12856..12963)
DNA (108bp) protein (36aa)
Aldo-keto reductase {ECO:0000313|EMBL:KFZ88933.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
Displaying 14 items

View Taxonomy