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PLM4_65_b1_redo_sep16_scaffold_4228

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4228_1
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2..247)
DNA (246bp) protein (82aa)
protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase {ECO:0000313|EMBL:AHJ98609.1}; EC=1.3.3.4 {ECO:0000313|EMBL:AHJ98609.1};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Protoporphyrinogen oxidase Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AF91_NATGS
PLM4_65_b1_redo_sep16_scaffold_4228_2
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(244..1224)
DNA (981bp) protein (327aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum.;"
hemH; ferrochelatase (EC:4.99.1.1)
Ferrochelatase Tax=Synechococcus sp. (strain RCC307) RepID=HEMH_SYNR3
PLM4_65_b1_redo_sep16_scaffold_4228_3
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1332..2726)
DNA (1395bp) protein (465aa)
Coproporphyrinogen-III oxidase Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIE3_RHOM4
oxygen-independent coproporphyrinogen III oxidase
Tax=CG_Delta_03
PLM4_65_b1_redo_sep16_scaffold_4228_4
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2723..3793)
DNA (1071bp) protein (357aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGS0_CHLTF
Tax=CG_Delta_03
PLM4_65_b1_redo_sep16_scaffold_4228_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3823..6690)
DNA (2868bp) protein (956aa)
Aconitase {ECO:0000313|EMBL:CDM65701.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CDM65701.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Aconitate hydratase 1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMS0_9BACT
aconitate hydratase 1
PLM4_65_b1_redo_sep16_scaffold_4228_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6812..7462
DNA (651bp) protein (217aa)
YceI family protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGH2_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_4228_7
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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7523..8317
DNA (795bp) protein (265aa)
Cytochrome c-type biogenesis protein CcsB bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
ResC/HemX-like cytochrome c biogenesis membrane protein
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_65_b1_redo_sep16_scaffold_4228_8
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8314..9579
DNA (1266bp) protein (422aa)
Glutamyl-tRNA reductase bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
glutamyl-tRNA reductase
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_65_b1_redo_sep16_scaffold_4228_9
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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9598..10515
DNA (918bp) protein (306aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_4228_10
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10512..11240
DNA (729bp) protein (243aa)
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75)
Uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase {ECO:0000313|EMBL:ABC19562.1}; EC=2.1.1.107 {ECO:0000313|EMBL:ABC19562.1};; EC=4.2.1.75 {ECO:0000313|EMBL:ABC19562.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
Uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJ27_MOOTA
PLM4_65_b1_redo_sep16_scaffold_4228_11
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11313..12242
DNA (930bp) protein (310aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0Q3_THERP
Tax=S_Thermoanaerobacterales_50_218
PLM4_65_b1_redo_sep16_scaffold_4228_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12318..13589
DNA (1272bp) protein (424aa)
Glutamate-1-semialdehyde 2,1-aminomutase bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamate-1-semialdehyde-2,1-aminomutase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_4228_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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13640..15181
DNA (1542bp) protein (514aa)
Di-/tripeptide transporter Tax=Cystobacter fuscus DSM 2262 RepID=S9NZ63_9DELT
amino acid/peptide transporter
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying 13 items

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