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PLM4_65_b1_redo_sep16_scaffold_4546

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4546_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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2..976
DNA (975bp) protein (325aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI0003624C17
TonB-dependent receptor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4546_trna_1
unknown

Not on your lists

comp(1052..1123)
DNA (72bp)
transferRNA Pro
PLM4_65_b1_redo_sep16_scaffold_4546_2
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

1191..1904
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4W7_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM00305.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_65_b1_redo_sep16_scaffold_4546_3
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1901..2347
DNA (447bp) protein (149aa)
Tax=GWA2_Ignavibacteria_54_16_curated
PLM4_65_b1_redo_sep16_scaffold_4546_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2355..3542)
DNA (1188bp) protein (396aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9F375_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF05316.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4546_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3640..4647)
DNA (1008bp) protein (336aa)
Leucyl aminopeptidase (Aminopeptidase T) Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZHH6_TERRK
leucyl aminopeptidase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_4546_6
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4644..5792)
DNA (1149bp) protein (383aa)
carboxylate-amine ligase Tax=Spirosoma spitsbergense RepID=UPI00037D4005
glutamate--cysteine ligase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM4_65_b1_redo_sep16_scaffold_4546_7
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(5808..6818)
DNA (1011bp) protein (337aa)
ial:IALB_1287 hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM4_65_b1_redo_sep16_scaffold_4546_8
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6942..7328
DNA (387bp) protein (129aa)
hypothetical protein Tax=Rhizobium leguminosarum RepID=UPI00037BBDF0
Uncharacterized protein {ECO:0000313|EMBL:KGE82714.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
PLM4_65_b1_redo_sep16_scaffold_4546_9
unknown

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comp(7330..7431)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4546_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7751..8245)
DNA (495bp) protein (165aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003065F7C
signal peptide protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_4546_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(8282..9040)
DNA (759bp) protein (253aa)
Ribonuclease PH Tax=Acetobacter pomorum DM001 RepID=F1YUF3_9PROT
ribonuclease PH
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_4546_12
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

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comp(9037..9639)
DNA (603bp) protein (201aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sporulation protein
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_4546_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(9636..11246)
DNA (1611bp) protein (537aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Putative N-acetylmuramoyl-L-alanine amidase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_4546_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11273..11698
DNA (426bp) protein (142aa)
osmC; peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin {ECO:0000313|EMBL:CBK39832.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CBK39832.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Peroxiredoxin Tax=Candidatus Nitrospira defluvii RepID=D8P9C3_9BACT
PLM4_65_b1_redo_sep16_scaffold_4546_15
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11774..12184)
DNA (411bp) protein (137aa)
Nucleic acid binding protein bin=GWF2_Lentisphaerae_57_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
nucleic acid binding protein
Tax=GWC2_Deltaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_4546_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(12181..12510)
DNA (330bp) protein (110aa)
prevent-host-death family protein
Prevent-host-death family protein bin=GWF2_Lentisphaerae_49_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_4546_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

13112..13516
DNA (405bp) protein (135aa)
CutA1 divalent ion tolerance protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9J2_ANADF
Uncharacterized protein {ECO:0000313|EMBL:KDA54841.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
CutA1 divalent ion tolerance protein
PLM4_65_b1_redo_sep16_scaffold_4546_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

13538..14878
DNA (1341bp) protein (447aa)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_4546_19
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14953..15915)
DNA (963bp) protein (321aa)
Uncharacterized protein Tax=Asticcacaulis sp. AC402 RepID=V4NFZ8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ75021.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
Cysteine-rich secretory protein family
PLM4_65_b1_redo_sep16_scaffold_4546_20
R_OD1_Wolfebacteria_42_16, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

15931..16155
DNA (225bp) protein (75aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361A115
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Wolfebacteria_42_16_curated
PLM4_65_b1_redo_sep16_scaffold_4546_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(16184..17323)
DNA (1140bp) protein (380aa)
cystathionine gamma-lyase (EC:2.5.1.48)
Cystathionine gamma-lyase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHZ5_CHLTF
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_4546_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17349..18305)
DNA (957bp) protein (319aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI86_CHLTF
PLM4_65_b1_redo_sep16_scaffold_4546_23
Mitsuokella multacida, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18361..18660)
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Mitsuokella multacida DSM 20544 RepID=C9KNI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEX68611.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella multacida DSM 20544.;"
zinc-binding protein
PLM4_65_b1_redo_sep16_scaffold_4546_24
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(19088..19912)
DNA (825bp) protein (275aa)
thiG; carboxythiazole phosphate tautomer synthase; K03149 thiamine biosynthesis ThiG bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiazole synthase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_4546_25
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(19944..20783)
DNA (840bp) protein (280aa)
pantothenate synthetase (EC:6.3.2.1)
pantoate--beta-alanine ligase Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028816B6
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_65_b1_redo_sep16_scaffold_4546_26
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20805..21230)
DNA (426bp) protein (142aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=PANB_CARHZ
PLM4_65_b1_redo_sep16_scaffold_4546_27
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21230..21613)
DNA (384bp) protein (128aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YUG3_DESAF
3-methyl-2-oxobutanoate hydroxymethyltransferase
Displaying 28 items

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