ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_20153

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_20153_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(134..928)
DNA (795bp) protein (265aa)
esterase family protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
esterase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_20153_2
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(973..2007)
DNA (1035bp) protein (345aa)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00035CF7F1
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
PLM4_65_b1_redo_sep16_scaffold_20153_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2458..2802)
DNA (345bp) protein (115aa)
cytochrome C Tax=Perlucidibaca piscinae RepID=UPI0003B30865
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:CDM64311.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_20153_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2799..3716)
DNA (918bp) protein (306aa)
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=U3GKY6_SINAD
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems {ECO:0000313|EMBL:CDM66088.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_20153_5
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3768..4562)
DNA (795bp) protein (265aa)
Putative uncharacterized protein Tax=Azospirillum amazonense Y2 RepID=G1Y434_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDI01778.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
ABC-type Co2+ transport system, periplasmic component
PLM4_65_b1_redo_sep16_scaffold_20153_6
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4559..5575)
DNA (1017bp) protein (339aa)
serine/threonine dehydratase Tax=Rhizobium giardinii RepID=UPI000378CB3E
pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:BAN22548.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
PLM4_65_b1_redo_sep16_scaffold_20153_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(5530..6738)
DNA (1209bp) protein (403aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLE2_9FIRM
hypothetical protein
Displaying 7 items

View Taxonomy