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PLM4_65_b1_redo_sep16_scaffold_1714

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1714_1
unknown

Not on your lists

comp(1..174)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1714_2
R_Planctomycetes_50_16, Planctomycetes, Bacteria

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comp(683..1996)
DNA (1314bp) protein (438aa)
Putative uncharacterized protein bin=GWA2_Planctomycetia_40_7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
PLM4_65_b1_redo_sep16_scaffold_1714_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

2137..4608
DNA (2472bp) protein (824aa)
DEAD_2 domain protein bin=GWA1_Deltaproteobacteria_52_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
DEAD/DEAH box helicase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1714_4
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(5038..5799)
DNA (762bp) protein (254aa)
Putative Rossmann fold nucleotide-binding protein Tax=Leptolyngbya sp. PCC 7375 RepID=K9EUE5_9CYAN
Putative Rossmann fold nucleotide-binding protein {ECO:0000313|EMBL:EKV00219.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
Rossmann fold nucleotide-binding protein
PLM4_65_b1_redo_sep16_scaffold_1714_5
unknown

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comp(5908..7329)
DNA (1422bp) protein (474aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1714_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(7447..8259)
DNA (813bp) protein (271aa)
Protein phosphatase 2C Tax=Holophaga foetida DSM 6591 RepID=H1P0D4_9BACT
protein phosphatase 2C-like protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1714_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(8325..8945)
DNA (621bp) protein (207aa)
Heat shock protein DnaJ domain protein Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KEW1_CYAP7
Uncharacterized protein {ECO:0000313|EMBL:KDA53965.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
heat shock protein DnaJ domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1714_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(9049..10158)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJZ5_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:KDA53966.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1714_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(10191..10919)
DNA (729bp) protein (243aa)
Transcriptional regulator, XRE family bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_1714_10
CG_Elusi_04, Elusimicrobia, Bacteria

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comp(11363..12208)
DNA (846bp) protein (282aa)
Tryptophan synthase alpha chain bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tryptophan synthase subunit alpha
Tax=CG_Elusi_04
PLM4_65_b1_redo_sep16_scaffold_1714_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(12205..13392)
DNA (1188bp) protein (396aa)
trpB; tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N1L9_ANATU
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1714_12
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13389..14024)
DNA (636bp) protein (212aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein Tax=Meganema perideroedes RepID=UPI00035D2181
N-(5'-phosphoribosyl)anthranilate isomerase
PLM4_65_b1_redo_sep16_scaffold_1714_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(14021..14788)
DNA (768bp) protein (256aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
indole-3-glycerol phosphate synthase Tax=Streptomyces sp. TOR3209 RepID=UPI0002FEFEFD
PLM4_65_b1_redo_sep16_scaffold_1714_14
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14785..15807)
DNA (1023bp) protein (341aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Anthranilate phosphoribosyltransferase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDF0_AMMDK
anthranilate phosphoribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_1714_15
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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comp(15804..16403)
DNA (600bp) protein (200aa)
Glutamine amidotransferase of anthranilate synthase Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYK7_STAND
glutamine amidotransferase
Tax=BJP_IG2102_Coriobacteriales_64_17
PLM4_65_b1_redo_sep16_scaffold_1714_16
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16400..17824)
DNA (1425bp) protein (475aa)
Anthranilate synthase, catalytic subunit Tax=Geobacter sulfurreducens RepID=D7AMK0_GEOSK
trpE; anthranilate synthase, catalytic subunit
Anthranilate synthase, catalytic subunit {ECO:0000313|EMBL:AAR35756.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_b1_redo_sep16_scaffold_1714_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(17821..19422)
DNA (1602bp) protein (534aa)
hypothetical protein; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] bin=CNBR_ACIDO species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-dehydroquinate dehydratase (EC:4.2.1.10)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1714_18
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(19457..20896)
DNA (1440bp) protein (480aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000363601C
PLM4_65_b1_redo_sep16_scaffold_1714_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(20854..21366)
DNA (513bp) protein (171aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptide deformylase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1714_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

21579..23906
DNA (2328bp) protein (776aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
FecR family protein
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 20 items

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