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PLM4_65_b1_redo_sep16_scaffold_1777

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1777_1
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3..221
DNA (219bp) protein (73aa)
hypothetical protein Tax=Mastigocladopsis repens RepID=UPI0002F44F33
Tetratricopeptide TPR_1 repeat-containing protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AFZ30262.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
PLM4_65_b1_redo_sep16_scaffold_1777_2
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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263..598
DNA (336bp) protein (112aa)
UPF0145 protein CfE428DRAFT_0285 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUC2_9BACT
hypothetical protein
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_65_b1_redo_sep16_scaffold_1777_3
Kosakonia sacchari, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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606..1061
DNA (456bp) protein (152aa)
Nucleoside triphosphatase NudI {ECO:0000256|HAMAP-Rule:MF_01846}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01846};; Pyrimidine deoxynucleoside triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01846}; dCTP diphosphatase {ECO:0000256|HAMAP-Rule:MF_01846}; dTTP diphosphatase {ECO:0000256|HAMAP-Rule:MF_01846}; dUTP diphosphatase {ECO:0000256|HAMAP-Rule:MF_01846}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia sacchari SP1.;"
nucleoside triphosphatase NudI Tax=Enterobacter cloacae RepID=UPI0002FBD7D4
nucleoside triphosphatase
PLM4_65_b1_redo_sep16_scaffold_1777_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1112..1576
DNA (465bp) protein (155aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91606.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
PLM4_65_b1_redo_sep16_scaffold_1777_5
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(1573..2481)
DNA (909bp) protein (303aa)
Uncharacterized protein bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
Protein of unknown function DUF2911
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1777_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(2478..2942)
DNA (465bp) protein (155aa)
id=3479344 bin=GWC1_Spirochaetes_27_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1777_7
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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2995..3240
DNA (246bp) protein (82aa)
hypothetical protein
hypothetical protein bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM4_65_b1_redo_sep16_scaffold_1777_8
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3237..3728
DNA (492bp) protein (164aa)
Acetyltransferase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U5X9_MYXSD
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AGC42982.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_65_b1_redo_sep16_scaffold_1777_9
unknown

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3725..4156
DNA (432bp) protein (144aa)
hypothetical protein Tax=Geitlerinema sp. PCC 7105 RepID=UPI00034B0259
PLM4_65_b1_redo_sep16_scaffold_1777_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4153..5100
DNA (948bp) protein (316aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAE1_SPHTD
Pyridoxal-5'-phosphate-dependent protein beta subunit
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1777_11
unknown

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comp(5134..5523)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1777_12
unknown

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5920..6384
DNA (465bp) protein (155aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1777_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(6392..7732)
DNA (1341bp) protein (447aa)
Uncharacterized protein Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RE63_CELLC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1777_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7795..8760
DNA (966bp) protein (322aa)
qor2; NADPH:quinone reductase (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5] bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
Alcohol dehydrogenase zinc-binding domain protein
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_1777_15

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comp(8757..9131)
DNA (375bp) protein (125aa)
Rhodanese domain protein Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JMN4_SYNJB
Rhodanese-like domain protein {ECO:0000313|EMBL:AIA11501.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rhodanese domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1777_16
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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comp(9146..10153)
DNA (1008bp) protein (336aa)
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Tax=Candidatus Actinomarina minuta RepID=S5DLW1_9ACTN
Tax=RBG_16_Caldithrix_48_16_curated
PLM4_65_b1_redo_sep16_scaffold_1777_17
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(10150..11175)
DNA (1026bp) protein (342aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase (NAD+) Tax=Congregibacter litoralis KT71 RepID=A4AAA2_9GAMM
Tax=RBG_16_Actinobacteria_70_17_curated
PLM4_65_b1_redo_sep16_scaffold_1777_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(11172..11996)
DNA (825bp) protein (275aa)
Putative enzyme (3.4.-) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMG8_9BACT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1777_19
unknown

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12048..12176
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1777_20
unknown

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12177..12416
DNA (240bp) protein (80aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1777_21
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12426..13922)
DNA (1497bp) protein (499aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9F0Z3_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN91316.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM4_65_b1_redo_sep16_scaffold_1777_22
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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14047..14988
DNA (942bp) protein (314aa)
ABC transporter, ATP-binding protein bin=GWA2_OP3_52_12 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
ABC transporter ATP-binding protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1777_23
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

14985..15839
DNA (855bp) protein (285aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036A27B2
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1777_24
unknown

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15889..16836
DNA (948bp) protein (316aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1777_25
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

16943..19030
DNA (2088bp) protein (696aa)
GreA/GreB family elongation factor Tax=Chthoniobacter flavus Ellin428 RepID=B4D3Z7_9BACT
GreA/GreB family elongation factor
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1777_26
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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19065..19658
DNA (594bp) protein (198aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
DinB family protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM4_65_b1_redo_sep16_scaffold_1777_27
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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19676..19825
DNA (150bp) protein (50aa)
Uncharacterized protein Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5U3_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ67659.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
PLM4_65_b1_redo_sep16_scaffold_1777_28
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(19812..21362)
DNA (1551bp) protein (517aa)
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase (NAD(+)) bin=GWD2_Deltaproteobacteria_55_8 species=Amycolicicoccus subflavus genus=Amycolicicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
PLM4_65_b1_redo_sep16_scaffold_1777_29
RLO_PLX_64_10, Bacteria

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comp(21404..21772)
DNA (369bp) protein (123aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Verrucomicrobium spinosum RepID=UPI0001745904
glyoxylase/bleomycin resistance protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_1777_30
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21787..22215)
DNA (429bp) protein (143aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WQ72_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW11980.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
Displaying items 1-30 of 32 in total

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