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PLM4_65_b1_redo_sep16_scaffold_1828

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1828_1
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3..1307)
DNA (1305bp) protein (435aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5AIQ1_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN01295.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM4_65_b1_redo_sep16_scaffold_1828_2
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(1593..3680)
DNA (2088bp) protein (696aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteriae_54_16_partial species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
PLM4_65_b1_redo_sep16_scaffold_1828_3
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3677..4627)
DNA (951bp) protein (317aa)
HEAT domain containing protein Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZW0_HALH1
HEAT domain-containing protein
Tax=BJP_IG2102_Ignavibacteriales_35_8
PLM4_65_b1_redo_sep16_scaffold_1828_4
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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comp(4609..5181)
DNA (573bp) protein (191aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Thauera RepID=C4ZMF7_THASP
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_65_b1_redo_sep16_scaffold_1828_5
unknown

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5259..5624
DNA (366bp) protein (122aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1828_6
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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5658..6350
DNA (693bp) protein (231aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
peptidase M50
Tax=RBG_13_Aminicenantes_62_12_curated
PLM4_65_b1_redo_sep16_scaffold_1828_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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6347..7351
DNA (1005bp) protein (335aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] bin=bin1_lowGC species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1828_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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7359..8123
DNA (765bp) protein (255aa)
scpA; chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
scpA; segregation and condensation protein A
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1828_9
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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8125..8802
DNA (678bp) protein (226aa)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
segregation and condensation protein B
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_65_b1_redo_sep16_scaffold_1828_10
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8799..10418
DNA (1620bp) protein (540aa)
hypothetical protein
hypothetical protein bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Tax=BJP_08E140C01_Xanthomonadales_64_42
PLM4_65_b1_redo_sep16_scaffold_1828_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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10423..11172
DNA (750bp) protein (250aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
pseudouridine synthase family (EC:5.4.99.12)
Pseudouridine synthase Tax=uncultured Acidobacteria bacterium RepID=Q7X2Z6_9BACT
PLM4_65_b1_redo_sep16_scaffold_1828_12
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

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11169..11876
DNA (708bp) protein (236aa)
Cytidylate kinase Tax=Gordonia sp. KTR9 RepID=J9SHE3_9ACTO
cytidylate kinase
Tax=CG_Delta_01
PLM4_65_b1_redo_sep16_scaffold_1828_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


11944..13776
DNA (1833bp) protein (611aa)
SSU ribosomal protein S1P; K02945 small subunit ribosomal protein S1 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S1
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1828_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

13809..14084
DNA (276bp) protein (92aa)
Putative DNA-binding protein Tax=uncultured Acidobacteria bacterium RepID=Q7X2Y8_9BACT
Putative DNA-binding protein {ECO:0000313|EMBL:AAP58576.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
nucleoid DNA-binding protein
PLM4_65_b1_redo_sep16_scaffold_1828_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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14119..14607
DNA (489bp) protein (163aa)
Histidine triad (HIT) protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YK3_SOLUE
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ABJ85262.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1828_16
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

14604..14990
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53819.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
PLM4_65_b1_redo_sep16_scaffold_1828_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

14990..15178
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53820.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_1828_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

15345..16475
DNA (1131bp) protein (377aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1828_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

16472..18328
DNA (1857bp) protein (619aa)
ABC-type multidrug transport system, ATPase and permease component Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZIC5_TERRK
multidrug ABC transporter ATPase/permease
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1828_20
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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18325..19215
DNA (891bp) protein (297aa)
YicC-like domain-containing protein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJ98_THEM7
YicC-like domain-containing protein
YicC-like domain-containing protein {ECO:0000313|EMBL:ADU51026.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM4_65_b1_redo_sep16_scaffold_1828_21
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

19212..19838
DNA (627bp) protein (209aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase Tax=Nitrosococcus oceani RepID=KGUA_NITOC
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1828_22
unknown

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19854..20120
DNA (267bp) protein (89aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1828_23
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

20148..21386
DNA (1239bp) protein (413aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase {ECO:0000313|EMBL:ABJ83340.1}; EC=4.1.1.36 {ECO:0000313|EMBL:ABJ83340.1};; EC=6.3.2.5 {ECO:0000313|EMBL:ABJ83340.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025H9_SOLUE
PLM4_65_b1_redo_sep16_scaffold_1828_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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21424..22110
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIW4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69469.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1828_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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22118..23407
DNA (1290bp) protein (430aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AP4_SOLUE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1828_26
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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23840..24118
DNA (279bp) protein (93aa)
Putative uncharacterized protein Tax=Streptomyces sp. Mg1 RepID=B4V918_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EDX24455.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
O-linked N-acetylglucosamine transferase
Displaying 26 items

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