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PLM4_65_b1_redo_sep16_scaffold_2028

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2028_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(3..737)
DNA (735bp) protein (245aa)
TonB family protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXR8_OPITP
TonB family protein
TonB family protein {ECO:0000313|EMBL:ACB74290.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_65_b1_redo_sep16_scaffold_2028_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(734..1639)
DNA (906bp) protein (302aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
lipoate synthase (EC:2.8.1.8)
Lipoyl synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGP8_CHLTF
PLM4_65_b1_redo_sep16_scaffold_2028_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(1636..2352)
DNA (717bp) protein (239aa)
lipoate-protein ligase B (EC:2.3.1.181)
Octanoyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ06_CHLTF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_2028_4
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

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comp(2340..3305)
DNA (966bp) protein (322aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_66_18 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
PLM4_65_b1_redo_sep16_scaffold_2028_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3610..5088)
DNA (1479bp) protein (493aa)
2-oxoglutarate dehydrogenase E2 component {ECO:0000313|EMBL:CDM66810.1}; EC=2.3.1.61 {ECO:0000313|EMBL:CDM66810.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component,-like enzyme (EC:2.3.1.61)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component,-like enzyme Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH10_CHLTF
PLM4_65_b1_redo_sep16_scaffold_2028_6
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5248..5643
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Massilia timonae CCUG 45783 RepID=K9DSY2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU80470.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
transmembrane protein
PLM4_65_b1_redo_sep16_scaffold_2028_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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5640..6335
DNA (696bp) protein (232aa)
Putative uncharacterized protein bin=GWC2_Ignavibacteria_56_12 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2028_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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6360..7418
DNA (1059bp) protein (353aa)
Periplasmic sensor signal transduction histidine kinase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKW1_KORVE
sensor signal transduction histidine kinase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2028_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7415..8191
DNA (777bp) protein (259aa)
Transcriptional regulator, LytR/AlgR family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKW2_KORVE
LytR/AlgR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_2028_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8188..10698
DNA (2511bp) protein (837aa)
aspartokinase/homoserine dehydrogenase (EC:1.1.1.3 2.7.2.4)
Aspartokinase/homoserine dehydrogenase {ECO:0000313|EMBL:BAH38409.1}; EC=1.1.1.3 {ECO:0000313|EMBL:BAH38409.1};; EC=2.7.2.4 {ECO:0000313|EMBL:BAH38409.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Aspartokinase/homoserine dehydrogenase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A849_GEMAT
PLM4_65_b1_redo_sep16_scaffold_2028_11
Acorus calamus, Acorus, Acorales, Liliopsida, Streptophyta, Viridiplantae

Not on your lists

10695..11627
DNA (933bp) protein (311aa)
thrB; homoserine kinase (EC:2.7.1.39)
Putative uncharacterized protein Tax=Vitis vinifera RepID=A5B5G1_VITVI
Homoserine kinase {ECO:0000313|EMBL:AIU48436.1}; Flags: Fragment;; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Acoraceae; Acorus.;" source="Acorus calamus (Sweet flag).;"
PLM4_65_b1_redo_sep16_scaffold_2028_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11759..12925
DNA (1167bp) protein (389aa)
Threonine synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A850_GEMAT
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AHG89128.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_2028_13
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

12922..14592
DNA (1671bp) protein (557aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJC5_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43025.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_2028_14
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14749..15729
DNA (981bp) protein (327aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003781CF6
glycosyltransferase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM4_65_b1_redo_sep16_scaffold_2028_15
BJP_IG2102_Elusimicrobia_52_42, Elusimicrobia lineage II, Elusimicrobia, Bacteria

Not on your lists

15726..16808
DNA (1083bp) protein (361aa)
Radical SAM domain protein bin=GWC2_Planctomycete_KSU_39_26 species=Thaumarchaeota archaeon SCGC AB-539-E09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
Tax=BJP_IG2102_Elusimicrobia_52_42
PLM4_65_b1_redo_sep16_scaffold_2028_16
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16961..17566)
DNA (606bp) protein (202aa)
Osmotically-inducible protein Y Flags: Tax=Salmonella enterica subsp. enterica serovar Weltevreden RepID=E9AAP0_SALET
Uncharacterized protein {ECO:0000313|EMBL:KFN48739.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
transport-associated
PLM4_65_b1_redo_sep16_scaffold_2028_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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17701..19392
DNA (1692bp) protein (564aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2028_18
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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19543..21339
DNA (1797bp) protein (599aa)
hypothetical protein Tax=Aquimarina agarilytica RepID=UPI000287FDDC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
PLM4_65_b1_redo_sep16_scaffold_2028_19
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21352..22230)
DNA (879bp) protein (293aa)
Collagen triple helix repeat-containing protein Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TBC3_9CLOT
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:EGD48327.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
hypothetical protein
Displaying 19 items

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