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PLM4_65_b1_redo_sep16_scaffold_2255

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2255_1
Synechococcus sp. PCC 7335, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2..238)
DNA (237bp) protein (79aa)
DegT/DnrJ/EryC1/StrS aminotransferase family Tax=Synechococcus sp. PCC 7335 RepID=B4WR73_9SYNE
DegT/DnrJ/EryC1/StrS aminotransferase family {ECO:0000313|EMBL:EDX86203.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7335.;"
degT; pleiotropic regulatory protein DegT
PLM4_65_b1_redo_sep16_scaffold_2255_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(252..1601)
DNA (1350bp) protein (450aa)
Ribosomal RNA small subunit methyltransferase B Tax=uncultured Acidobacteria bacterium RepID=H5SCJ9_9BACT
ribosomal RNA small subunit methyltransferase RsmB
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2255_3
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(1601..2539)
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1).;"
Methionyl-tRNA formyltransferase Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3X8_THEA1
methionyl-tRNA formyltransferase
PLM4_65_b1_redo_sep16_scaffold_2255_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(2589..4922)
DNA (2334bp) protein (778aa)
FtsK/SpoIIIE family protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA translocase FtsK
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2255_5
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

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5005..5427
DNA (423bp) protein (141aa)
protein tyrosine phosphatase (EC:1.20.4.1)
Protein tyrosine phosphatase Tax=Chthonomonas calidirosea T49 RepID=S0EW89_9BACT
Tax=RBG_13_Chloroflexi_68_17_curated
PLM4_65_b1_redo_sep16_scaffold_2255_6
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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5586..6611
DNA (1026bp) protein (342aa)
diphosphate--fructose-6-phosphate1-phosphotransferase (EC:2.7.1.90)
Diphosphate--fructose-6-phosphate1-phosphotransf erase {ECO:0000313|EMBL:ACZ85713.1}; EC=2.7.1.90 {ECO:0000313|EMBL:ACZ85713.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
6-phosphofructokinase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B6E9_STRRD
PLM4_65_b1_redo_sep16_scaffold_2255_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6677..7708
DNA (1032bp) protein (344aa)
Radical SAM domain protein protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FSM7_SORC5
radical SAM domain-containing protein
Radical SAM domain protein protein {ECO:0000313|EMBL:CAN95412.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM4_65_b1_redo_sep16_scaffold_2255_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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7753..7977
DNA (225bp) protein (75aa)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2255_9
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7999..8811)
DNA (813bp) protein (271aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000256|SAAS:SAAS00094257};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
hypothetical protein Tax=Blautia producta RepID=UPI00036A4439
UDP-diphosphatase
PLM4_65_b1_redo_sep16_scaffold_2255_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(8831..10447)
DNA (1617bp) protein (539aa)
beta-lactamase-like; K12574 ribonuclease J [EC:3.1.-.-] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase-like protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_2255_11
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(10444..11241)
DNA (798bp) protein (266aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Ribosomal RNA small subunit methyltransferase A Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDG4_CHLTF
PLM4_65_b1_redo_sep16_scaffold_2255_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(11238..12287)
DNA (1050bp) protein (350aa)
Magnesium and cobalt transport protein CorA Tax=Roseiflexus sp. (strain RS-1) RepID=A5UVY2_ROSS1
magnesium and cobalt transport protein CorA
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM4_65_b1_redo_sep16_scaffold_2255_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

12335..13480
DNA (1146bp) protein (382aa)
Diguanylate cyclase bin=GWC2_Deltaproteobacteria_56_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
cph2C; GAF/GGDEF domain-containing protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2255_14
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

13571..14899
DNA (1329bp) protein (443aa)
L-lysine 6-transaminase (EC:2.6.1.36)
L-lysine 6-transaminase Tax=Holophaga foetida DSM 6591 RepID=H1NZ27_9BACT
L-lysine 6-aminotransferase {ECO:0000313|EMBL:KDA55077.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_2255_15
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

15107..16327
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U9A6_OCEP5
hypothetical protein
Tax=CG_Anaero_02
PLM4_65_b1_redo_sep16_scaffold_2255_16
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16375..18453)
DNA (2079bp) protein (693aa)
PA14 domain protein Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UI11_CELFN
Beta-glucosidase {ECO:0000313|EMBL:KGM03761.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
PA14 domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_2255_17
R_OD1_48_18, Parcubacteria, Bacteria

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18605..19435
DNA (831bp) protein (277aa)
Alpha-fucosidase Tax=Cystobacter fuscus DSM 2262 RepID=S9R3P0_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_48_18_curated
PLM4_65_b1_redo_sep16_scaffold_2255_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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19509..20315
DNA (807bp) protein (269aa)
dioxygenase
Putative uncharacterized protein bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_2255_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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20312..21148
DNA (837bp) protein (279aa)
Universal stress protein family protein bin=GWC2_Deltaproteobacteria_56_8 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
UspA domain-containing protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_2255_20
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(21216..22022)
DNA (807bp) protein (269aa)
inositol monophosphatase Tax=Rheinheimera perlucida RepID=UPI0003600D61
Uncharacterized protein {ECO:0000313|EMBL:KDA53567.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
inositol monophosphatase
PLM4_65_b1_redo_sep16_scaffold_2255_21
unknown

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comp(22019..22378)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2255_22
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(22381..23667)
DNA (1287bp) protein (429aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Dihydroorotase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCE8_ANADF
dihydroorotase, multifunctional complex type
PLM4_65_b1_redo_sep16_scaffold_2255_23
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23664..24656)
DNA (993bp) protein (331aa)
aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] bin=CNBR_ACIDO species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_2255_24
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24682..25242)
DNA (561bp) protein (187aa)
bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKS6_DESK7
Tax=S_Thermoanaerobacterales_50_218
PLM4_65_b1_redo_sep16_scaffold_2255_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

25331..26614
DNA (1284bp) protein (428aa)
Putative uncharacterized protein bin=GWA2_Deltaproteo_65_63 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
GTPase-like protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_2255_26
GWA2_OP11_47_9, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(26611..27018)
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CD94_DESTA
Uncharacterized protein {ECO:0000313|EMBL:KKU85964.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_47_9.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2255_27
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

comp(27005..27322)
DNA (318bp) protein (106aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XXH8_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM4_65_b1_redo_sep16_scaffold_2255_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27391..28311)
DNA (921bp) protein (307aa)
GTP-binding protein Era; K03595 GTP-binding protein Era bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
era; GTPase Era
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2255_29
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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comp(28308..29546)
DNA (1239bp) protein (413aa)
CBS domain containing protein Tax=uncultured Acidobacteria bacterium RepID=H5SIW6_9BACT
CBS domain containing protein {ECO:0000313|EMBL:BAL56102.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2255_30

Not on your lists

comp(29543..29968)
DNA (426bp) protein (142aa)
Putative enzyme {ECO:0000313|EMBL:CBH99443.1}; EC=3.4.24.- {ECO:0000313|EMBL:CBH99443.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative enzyme Tax=mine drainage metagenome RepID=E6PWY4_9ZZZZ
hypothetical protein
Displaying items 1-30 of 35 in total

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