ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_7482

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7482_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(3..1007)
DNA (1005bp) protein (335aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54565.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Peptidase T2 asparaginase 2 bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
asparaginase
PLM4_65_b1_redo_sep16_scaffold_7482_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(1015..1422)
DNA (408bp) protein (136aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7482_3
unknown

Not on your lists

comp(1502..2599)
DNA (1098bp) protein (366aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7482_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2622..4733)
DNA (2112bp) protein (704aa)
Protein kinase Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21DN0_SACD2
protein kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7482_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4720..5412)
DNA (693bp) protein (231aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RV6_SOLUE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7482_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6064..8091
DNA (2028bp) protein (676aa)
Oligopeptide transporter, OPT family Tax=Cystobacter fuscus DSM 2262 RepID=S9PPB4_9DELT
oligopeptide transporter OPT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_7482_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(8099..9283)
DNA (1185bp) protein (395aa)
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
Glycine C-acetyltransferase bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_7482_8
unknown

Not on your lists

comp(9290..9757)
DNA (468bp) protein (156aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7482_9
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(9781..10860)
DNA (1080bp) protein (360aa)
L-threonine 3-dehydrogenase; K00060 threonine 3-dehydrogenase [EC:1.1.1.103] bin=bin9_gal15 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin9_gal15 organism_group=GAL15
tdh; L-threonine 3-dehydrogenase
Tax=CSP1_3_Armatimonadetes
PLM4_65_b1_redo_sep16_scaffold_7482_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10946..11401)
DNA (456bp) protein (152aa)
putative fructose-bisphosphate aldolase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
aldolase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 10 items

View Taxonomy