ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_5581

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5581_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

478..846
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_5581_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(892..1329)
DNA (438bp) protein (146aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_5581_3
unknown

Not on your lists

comp(1449..1682)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5581_4
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2139..3704)
DNA (1566bp) protein (522aa)
UPI0003CF9AF9 related cluster Tax=unknown RepID=UPI0003CF9AF9
Methyltransferase {ECO:0000313|EMBL:ESY36549.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5581_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3899..5332)
DNA (1434bp) protein (478aa)
UbiD family decarboxylases bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UbiD family decarboxylase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_5581_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5484..6578)
DNA (1095bp) protein (365aa)
Gentisate 1,2-dioxygenase Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RML4_MYCRN
gentisate 1,2-dioxygenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_5581_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6707..7411)
DNA (705bp) protein (235aa)
TENA/THI-4 protein Tax=Thermoplasmatales archaeon Gpl RepID=T0LY61_9EURY
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_5581_8
Cohnella sp. VKM B-2846, Cohnella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7503..8570)
DNA (1068bp) protein (356aa)
ykfB; L-Ala-D/L-Glu epimerase YkfB (EC:5.1.1.-)
Muconate cycloisomerase Tax=Lactobacillus otakiensis JCM 15040 RepID=S4PN30_9LACO
Uncharacterized protein {ECO:0000313|EMBL:KIL36222.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
PLM4_65_b1_redo_sep16_scaffold_5581_9
GWA2_OP3_52_12_curated, Omnitrophica, Bacteria

Not on your lists

8691..10403
DNA (1713bp) protein (571aa)
Radical SAM domain protein bin=GWA2_OP3_52_12 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Fe-S oxidoreductase
Tax=GWA2_OP3_52_12_curated
PLM4_65_b1_redo_sep16_scaffold_5581_10
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10418..11617
DNA (1200bp) protein (400aa)
Acyl-CoA transferase Tax=Thauera phenylacetica B4P RepID=N6YW57_9RHOO
Acyl-CoA transferase {ECO:0000313|EMBL:ENO98481.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
L-carnitine dehydratase/bile acid-inducible protein F
PLM4_65_b1_redo_sep16_scaffold_5581_11
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11858..12703
DNA (846bp) protein (282aa)
citrate synthase Tax=Acidovorax avenae RepID=UPI0002DC84D9
Citrate synthase
Citrate synthase {ECO:0000313|EMBL:ADX47296.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PLM4_65_b1_redo_sep16_scaffold_5581_12
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12866..13270
DNA (405bp) protein (135aa)
Uncharacterized protein UPF0065 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TRJ0_ACIAC
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying 12 items

View Taxonomy