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PLM4_65_b1_redo_sep16_scaffold_5482

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5482_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(76..2832)
-----------------
DNA (2757bp)
protein (919aa)
Protein translocase subunit SecA Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=SECA_PELCD
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
preprotein translocase subunit SecA
PLM4_65_b1_redo_sep16_scaffold_5482_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(2958..3860)
-----------------
DNA (903bp)
protein (301aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Peptidase, M23/M37 family
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5482_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(4010..5542)
-----------------
DNA (1533bp)
protein (511aa)
Mg chelatase, subunit ChlI Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKE7_RHOMR
Mg chelatase subunit ChlI
Mg chelatase, subunit ChlI {ECO:0000313|EMBL:ACY48410.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_b1_redo_sep16_scaffold_5482_4

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5642..6436
-----------------
DNA (795bp)
protein (265aa)
Thymidylate synthase Tax=uncultured organism RepID=L7RXG0_9ZZZZ
Thymidylate synthase {ECO:0000313|EMBL:AGC09582.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
thymidylate synthase
PLM4_65_b1_redo_sep16_scaffold_5482_5
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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6433..6948
-----------------
DNA (516bp)
protein (172aa)
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; Flags: Precursor;; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
Dihydrofolate reductase Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWB5_PIRSD
PLM4_65_b1_redo_sep16_scaffold_5482_6
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6998..7603
-----------------
DNA (606bp)
protein (202aa)
LemA family protein {ECO:0000313|EMBL:KFA93615.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
LemA family protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
lema family protein
PLM4_65_b1_redo_sep16_scaffold_5482_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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7609..8394
-----------------
DNA (786bp)
protein (262aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D733_9BACT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5482_8
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8408..9610)
-----------------
DNA (1203bp)
protein (401aa)
kynureninase (EC:3.7.1.3)
Kynureninase {ECO:0000313|EMBL:ABC82933.1}; EC=3.7.1.3 {ECO:0000313|EMBL:ABC82933.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003749DC6
PLM4_65_b1_redo_sep16_scaffold_5482_9

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comp(9640..10419)
-----------------
DNA (780bp)
protein (260aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; species="Bacteria; environmental samples.;" source="uncultured bacterium AR_412.;"
Tryptophan 2,3-dioxygenase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=T23O_HERA2
tryptophan 23-dioxygenase
PLM4_65_b1_redo_sep16_scaffold_5482_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(10491..14033)
-----------------
DNA (3543bp)
protein (1181aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
UvrD/REP helicase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5482_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(14030..17458)
-----------------
DNA (3429bp)
protein (1143aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54011.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Putative uncharacterized protein bin=GWA2_Elusimicrobia_66_18 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
PLM4_65_b1_redo_sep16_scaffold_5482_12
unknown

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comp(17459..18400)
-----------------
DNA (942bp)
protein (314aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5482_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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18615..19796
-----------------
DNA (1182bp)
protein (394aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CDM66824.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CDM66824.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase Tax=uncultured marine group II euryarchaeote EF100_57A08 RepID=A9QP30_9EURY bin=16ft_combo_ws3_JS1 species=uncultured marine group II euryarchaeote EF100_57A08 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PLM4_65_b1_redo_sep16_scaffold_5482_14

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19799..20554
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000379792A
Marine sediment metagenome DNA, contig: S03H2_L00045 {ECO:0000313|EMBL:GAH26846.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR
PLM4_65_b1_redo_sep16_scaffold_5482_15
R_Deltaproteobacteria_43_9, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20564..21469)
-----------------
DNA (906bp)
protein (302aa)
speB1; Agmatinase 1 (EC:3.5.3.11)
Agmatinase Tax=uncultured candidate division OP1 bacterium RepID=H5SQH2_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Deltaproteobacteria_43_9_curated
PLM4_65_b1_redo_sep16_scaffold_5482_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(21728..22132)
-----------------
DNA (405bp)
protein (135aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 16 items

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