ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_17836

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_17836_1
GWB1_OP11_44_11_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


65..385
DNA (321bp) protein (107aa)
50S ribosomal protein L24 {ECO:0000313|EMBL:KKT34302.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_44_11b.;"
ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
50S ribosomal protein L24
PLM4_65_b1_redo_sep16_scaffold_17836_2
RHI_OP11_Woesebacteria_46_16, Woesebacteria, Microgenomates, Bacteria

Not on your lists


387..932
DNA (546bp) protein (182aa)
50S ribosomal protein L5 Tax=uncultured bacterium RepID=K2ETI2_9BACT
50S ribosomal protein L5
Tax=RIFCSPHIGHO2_12_FULL_OP11_Woesebacteria_46_16_curated
PLM4_65_b1_redo_sep16_scaffold_17836_3
GWC1_OP11_43_13, Microgenomates, Bacteria

Not on your lists


945..1130
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z {ECO:0000313|EMBL:KKS95233.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWC1_43_13.;"
ribosomal protein S14; K02954 small subunit ribosomal protein S14 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
30S ribosomal protein S14
PLM4_65_b1_redo_sep16_scaffold_17836_4
GWE1_OP11_45_18, Woesebacteria, Microgenomates, Bacteria

Not on your lists


1154..1531
DNA (378bp) protein (126aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:KKU03761.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWE1_45_18.;"
ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
rpsH; 30S ribosomal protein S8
PLM4_65_b1_redo_sep16_scaffold_17836_5
RIFOXYB1_FULL_OP11_Woesebacteria_38_16_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists


1533..2078
DNA (546bp) protein (182aa)
50S ribosomal protein L6 Tax=Desulfotomaculum RepID=RL6_DESRM bin=GWF1_OP11_31_35_complete species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
50S ribosomal protein L6
Tax=RIFOXYB1_FULL_OP11_Woesebacteria_38_16_curated
PLM4_65_b1_redo_sep16_scaffold_17836_6
R_OP11_Woesebacteria_41_10, Woesebacteria, Microgenomates, Bacteria

Not on your lists


2097..2435
DNA (339bp) protein (113aa)
50S ribosomal protein L18 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D3I8_LACBR
rplR; 50S ribosomal protein L18
Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_41_10_curated
PLM4_65_b1_redo_sep16_scaffold_17836_7
RBG_13_OP11_Woesebacteria_46_13_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists


2432..2893
DNA (462bp) protein (154aa)
30S ribosomal protein S5 Tax=uncultured bacterium RepID=K2ETN4_9BACT
30S ribosomal protein S5
Tax=RBG_13_OP11_Woesebacteria_46_13_curated
PLM4_65_b1_redo_sep16_scaffold_17836_8
GWB1_OP11_44_11_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


2893..3336
DNA (444bp) protein (148aa)
50S ribosomal protein L15 Tax=uncultured bacterium RepID=K2EVV4_9BACT
50S ribosomal protein L15 {ECO:0000313|EMBL:KKT34295.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_44_11b.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_17836_9
RBG_16_OP11_Woesebacteria_42_24_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists


3329..4213
DNA (885bp) protein (295aa)
sti:Sthe_1056 preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
Tax=RBG_16_OP11_Woesebacteria_42_24_curated
PLM4_65_b1_redo_sep16_scaffold_17836_10
RBG_16_OP11_Woesebacteria_36_11_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

4291..4569
DNA (279bp) protein (93aa)
Suspect SCG annotation. See neighboring gene [PLM4_65_b1_redo_sep16_scaffold_17836_9].
preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
protein translocase subunit secY/sec61 alpha
Tax=RBG_16_OP11_Woesebacteria_36_11_curated
PLM4_65_b1_redo_sep16_scaffold_17836_11
unknown

Not on your lists

comp(4570..4992)
DNA (423bp) protein (141aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_17836_12
Microgenomates bacterium GW2011_GWC1_39_7b, Microgenomates, Bacteria

Not on your lists

5389..6024
DNA (636bp) protein (212aa)
Adenylate kinase Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KT72_ARCVS bin=GWF1_OP11_31_35_complete species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
Adenylate kinase {ECO:0000313|EMBL:KKR27005.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWC1_39_7b.;"
adenylate kinase
PLM4_65_b1_redo_sep16_scaffold_17836_13
GWB1_OP11_39_10b, Woesebacteria, Microgenomates, Bacteria

Not on your lists

6017..6367
DNA (351bp) protein (117aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase Tax=uncultured bacterium RepID=K2EVS4_9BACT
Methionine aminopeptidase {ECO:0000313|EMBL:KKQ94397.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_39_10b.;"
PLM4_65_b1_redo_sep16_scaffold_17836_14
GWB1_OP11_44_11_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

6321..6701
DNA (381bp) protein (127aa)
map; methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] bin=GWC1_OP11_49_16_COMPLETE species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
Methionine aminopeptidase {ECO:0000313|EMBL:KKT34292.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_44_11b.;"
methionine aminopeptidase
PLM4_65_b1_redo_sep16_scaffold_17836_15
GWA1_OP11_38_8, Woesebacteria, Microgenomates, Bacteria

Not on your lists

6703..6918
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 Tax=uncultured bacterium RepID=K2DGI0_9BACT
Translation initiation factor IF-1 {ECO:0000313|EMBL:KKQ84051.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_38_8.;"
translation initiation factor IF-1
PLM4_65_b1_redo_sep16_scaffold_17836_16
RIFOXYB1_FULL_OP11_Woesebacteria_41_13_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists


7036..7449
DNA (414bp) protein (138aa)
30S ribosomal protein S13 Tax=uncultured bacterium RepID=K2EGA9_9BACT
30S ribosomal protein S13
Tax=RIFOXYB1_FULL_OP11_Woesebacteria_41_13_curated
PLM4_65_b1_redo_sep16_scaffold_17836_17
R_RIF_OP11_02_38_20, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


7451..7813
DNA (363bp) protein (121aa)
30S ribosomal protein S11 Tax=uncultured bacterium RepID=K2FRT5_9BACT
30S ribosomal protein S11
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_02_38_20_curated
PLM4_65_b1_redo_sep16_scaffold_17836_18
GWC1_OP11_43_10_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


7837..8439
DNA (603bp) protein (201aa)
30S ribosomal protein S4 Tax=uncultured bacterium RepID=K2E5L4_9BACT
30S ribosomal protein S4 {ECO:0000313|EMBL:KKS81032.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC1_43_10b.;"
rpsD; 30S ribosomal protein S4
PLM4_65_b1_redo_sep16_scaffold_17836_19
GWC2_OP11_45_9b, Woesebacteria, Microgenomates, Bacteria

Not on your lists

8458..9369
DNA (912bp) protein (304aa)
DNA-directed RNA polymerase subunit alpha Tax=uncultured bacterium RepID=K2EVT0_9BACT
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:KKU17718.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC2_45_9.;"
DNA-directed RNA polymerase
PLM4_65_b1_redo_sep16_scaffold_17836_20
RIFOXYD1_FULL_OP11_Woesebacteria_40_21_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists


9362..9856
DNA (495bp) protein (165aa)
50S ribosomal protein L17 Tax=uncultured bacterium RepID=K2ETK5_9BACT
50S ribosomal protein L17
Tax=RIFOXYD1_FULL_OP11_Woesebacteria_40_21_curated
PLM4_65_b1_redo_sep16_scaffold_17836_21
GWA1_OP11_33_33, Woesebacteria, Microgenomates, Bacteria

Not on your lists


9853..10230
DNA (378bp) protein (126aa)
50S ribosomal protein L13 Tax=Roseiflexus RepID=RL13_ROSCS bin=GWF1_OP11_31_35_complete species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
50S ribosomal protein L13 {ECO:0000313|EMBL:KKP50610.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_33_33.;"
rplM; 50S ribosomal protein L13
PLM4_65_b1_redo_sep16_scaffold_17836_22
R_RIF_OP11_02_38_20, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


10232..10642
DNA (411bp) protein (137aa)
ribosomal protein S9; K02996 small subunit ribosomal protein S9 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Ribosomal protein S9, bacterial/plastid
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_02_38_20_curated
PLM4_65_b1_redo_sep16_scaffold_17836_23
unknown

Not on your lists

10652..11128
DNA (477bp) protein (159aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_17836_24
GWB1_OP11_41_10, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(11131..12768)
DNA (1638bp) protein (546aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CN28_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR87311.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_41_10.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_17836_25
R_OP11_Woesebacteria_44_24b, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(12814..13335)
DNA (522bp) protein (174aa)
Uncharacterized protein bin=GWC1_OD1_38_17 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OP11_Woesebacteria_44_24b_curated
PLM4_65_b1_redo_sep16_scaffold_17836_trna_1
unknown

Not on your lists

13377..13442
DNA (66bp)
transferRNA Pseudo
Displaying 26 items

View Taxonomy