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PLM4_65_b1_redo_sep16_scaffold_4661

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4661_1
unknown

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comp(3..140)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4661_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(137..622)
DNA (486bp) protein (162aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XW30_9BACT
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_4661_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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662..2860
DNA (2199bp) protein (733aa)
CoA-binding domain protein Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WXF1_BACT2 bin=16ft_combo_ws3_JS1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CoA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_4661_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2857..3762
DNA (906bp) protein (302aa)
Putative uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFI9_ANADE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_4661_5
unknown

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comp(3788..4018)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4661_6
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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4146..5171
DNA (1026bp) protein (342aa)
menF; menaquinone-specific isochorismate synthase (EC:5.4.4.2)
Putative menaquinone-specific isochorismate synthase Tax=Waddlia chondrophila (strain ATCC VR-1470 / WSU 86-1044) RepID=D6YW64_WADCW
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_65_b1_redo_sep16_scaffold_4661_7
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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5168..6736
DNA (1569bp) protein (523aa)
Putative uncharacterized protein Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4H2_9CHLA
menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_65_b1_redo_sep16_scaffold_4661_8
Akkermansia muciniphila, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6733..7452
DNA (720bp) protein (240aa)
Uncharacterized protein Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UQV8_AKKM8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD04843.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia.;" source="Akkermansia muciniphila (strain ATCC BAA-835 / Muc).;"
PLM4_65_b1_redo_sep16_scaffold_4661_9
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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7544..8374
DNA (831bp) protein (277aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
menB; naphthoate synthase (EC:4.1.3.36)
dihydroxynaphthoic acid synthetase Tax=Verrucomicrobium spinosum RepID=UPI0001744E5D
PLM4_65_b1_redo_sep16_scaffold_4661_10
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

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8371..9255
DNA (885bp) protein (295aa)
menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC:2.5.1.-)
1,4-dihydroxy-2-naphthoate octaprenyltransferase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FMQ2_STIAD
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
PLM4_65_b1_redo_sep16_scaffold_4661_11
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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9252..10361
DNA (1110bp) protein (370aa)
menE; o-succinylbenzoate-CoA ligase (EC:6.2.1.26)
Putative o-succinylbenzoate-CoA ligase Tax=Waddlia chondrophila RepID=D6YW78_WADCW
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_65_b1_redo_sep16_scaffold_4661_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(10419..12116)
DNA (1698bp) protein (566aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7P1_GEMAT
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AHG93744.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_4661_trna_2
unknown

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comp(12169..12240)
DNA (72bp)
transferRNA Thr
PLM4_65_b1_redo_sep16_scaffold_4661_trna_1
unknown

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comp(12246..12327)
DNA (82bp)
transferRNA Leu
PLM4_65_b1_redo_sep16_scaffold_4661_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12466..12831
DNA (366bp) protein (122aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium amorphae genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_4661_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(12828..13415)
DNA (588bp) protein (196aa)
Nitrogen fixation protein NifU Tax=uncultured Acidobacteria bacterium RepID=H5SPR6_9BACT
Nitrogen fixation protein NifU {ECO:0000313|EMBL:BAL58152.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Nfu/NifU-domain containing protein
PLM4_65_b1_redo_sep16_scaffold_4661_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(13513..14868)
DNA (1356bp) protein (452aa)
Glycosyl hydrolase Tax=uncultured Acidobacteria bacterium RepID=H5SFE9_9BACT
glycosyl hydrolase family protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
Displaying 17 items

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