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PLM4_65_b1_redo_sep16_scaffold_1306

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1306_1
unknown

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1..84
DNA (84bp) protein (28aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1306_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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81..2726
DNA (2646bp) protein (882aa)
Serine/threonine protein kinase Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WXE8_PSEUU
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG89364.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1306_3

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2692..3411
DNA (720bp) protein (240aa)
hypothetical protein Tax=Woodsholea maritima RepID=UPI0003626566
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49492.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
abortive infection protein
PLM4_65_b1_redo_sep16_scaffold_1306_4
GWA2_OP11_38_24, Daviesbacteria, Microgenomates, Bacteria

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comp(3429..4433)
DNA (1005bp) protein (335aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ64940.1}; Flags: Fragment;; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_38_24.;"
Putative kelch repeat-containing protein bin=GWB2_Elusimicrobium_63_22 species=uncultured bacterium RM35 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
PLM4_65_b1_redo_sep16_scaffold_1306_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4562..5965
DNA (1404bp) protein (468aa)
Putative dipeptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3I6_GEMAT
putative dipeptidase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1306_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5914..6510
DNA (597bp) protein (199aa)
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:AHG89267.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_1306_7
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6572..9295
DNA (2724bp) protein (908aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000377E9C5
protein kinase
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_b1_redo_sep16_scaffold_1306_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9386..10768
DNA (1383bp) protein (461aa)
Di-haem cytochrome c peroxidase Tax=Plesiocystis pacifica SIR-1 RepID=A6GBH1_9DELT
Di-heme cytochrome c peroxidase
Di-heme cytochrome c peroxidase {ECO:0000313|EMBL:AHG89363.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1306_9
unknown

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10908..11333
DNA (426bp) protein (142aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1306_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11634..12824)
DNA (1191bp) protein (397aa)
Butyryl-CoA dehydrogenase bin=GWA2_Elusimicrobia_56_46 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
acyl-CoA dehydrogenase, short-chain specific
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1306_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(12847..13590)
DNA (744bp) protein (248aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1306_12
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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13764..14969
DNA (1206bp) protein (402aa)
Mn2+ and Fe2+ transporter of the NRAMP family-like protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CET9_MYXFH
Mn2+ and Fe2+ transporter of the NRAMP family-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_65_b1_redo_sep16_scaffold_1306_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(14986..17751)
DNA (2766bp) protein (922aa)
Permease Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A099_OPITP
MacB-like periplasmic core domain protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1306_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(17754..18095)
DNA (342bp) protein (114aa)
PadR family transcripitonal regulator Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003702704
PadR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1306_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(18181..19869)
DNA (1689bp) protein (563aa)
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Glutamine--tRNA ligase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAD4_GEMAT
PLM4_65_b1_redo_sep16_scaffold_1306_16
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19931..21328)
DNA (1398bp) protein (466aa)
Glutamyl-tRNA(Gln) amidotransferase subunit D bin=GWA2_Elusimicrobia_69_24 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
glutamyl-tRNA(Gln) amidotransferase subunit D
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_65_b1_redo_sep16_scaffold_1306_17
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21325..23379)
DNA (2055bp) protein (685aa)
Glutamyl-tRNA(Gln) amidotransferase subunit E bin=GWA2_Elusimicrobia_69_24 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
glutamyl-tRNA(Gln) amidotransferase subunit E
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_65_b1_redo_sep16_scaffold_1306_18
Ectocarpus siliculosus, Ectocarpus, Ectocarpales, Phaeophyceae, Eukaryota

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23461..24159
DNA (699bp) protein (233aa)
Chalcone Isomerase {ECO:0000313|EMBL:CBJ30273.1}; EC=5.5.1.6 {ECO:0000313|EMBL:CBJ30273.1};; species="Eukaryota; Stramenopiles; PX clade; Phaeophyceae; Ectocarpales; Ectocarpaceae; Ectocarpus.;" source="Ectocarpus siliculosus (Brown alga).;"
Chalcone Isomerase Tax=Ectocarpus siliculosus RepID=D7FP06_ECTSI
PLM4_65_b1_redo_sep16_scaffold_1306_19
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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24341..24760
DNA (420bp) protein (140aa)
Response regulator receiver protein Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QHS4_DESB2
response regulator receiver protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_65_b1_redo_sep16_scaffold_1306_20
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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24817..25956
DNA (1140bp) protein (380aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
response regulator receiver sensor signal transduction histidine kinase
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_65_b1_redo_sep16_scaffold_1306_21
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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25953..26381
DNA (429bp) protein (143aa)
Response regulator receiver bin=GWA2_Elusimicrobia_69_24 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
two component transcriptional regulator
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_b1_redo_sep16_scaffold_1306_22
CG_CP01_01, CG_CP01, Bacteria

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26378..27412
DNA (1035bp) protein (345aa)
hydrogenase bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
4Fe-4S ferredoxin
Tax=CG_CP01_01
PLM4_65_b1_redo_sep16_scaffold_1306_23

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27396..28268
DNA (873bp) protein (291aa)
Marine sediment metagenome DNA, contig: S06H3_C00987 {ECO:0000313|EMBL:GAH90868.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oxidoreductase bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein
PLM4_65_b1_redo_sep16_scaffold_1306_24

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28281..29063
DNA (783bp) protein (261aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAS5_GEOUR
Marine sediment metagenome DNA, contig: S06H3_S02924 {ECO:0000313|EMBL:GAI23461.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NADH ubiquinone oxidoreductase, 20 kDa subunit
PLM4_65_b1_redo_sep16_scaffold_1306_25
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

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29060..30340
DNA (1281bp) protein (427aa)
Nickel-dependent hydrogenase, large subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAS4_GEOUR
nickel-dependent hydrogenase, large subunit
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
PLM4_65_b1_redo_sep16_scaffold_1306_26
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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30344..32341
DNA (1998bp) protein (666aa)
histidine kinase Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B441AC
integral membrane sensor signal transduction histidine kinase
Tax=RBG_13_Aminicenantes_62_12_curated
PLM4_65_b1_redo_sep16_scaffold_1306_trna_1
unknown

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32378..32467
DNA (90bp)
transferRNA Ser
PLM4_65_b1_redo_sep16_scaffold_1306_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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32468..33493
DNA (1026bp) protein (342aa)
Glutamate--tRNA ligase Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI5_9BACT
glutamyl-tRNA synthetase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
Displaying 28 items

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