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PLM4_65_b1_redo_sep16_scaffold_2826

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2826_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3..749)
DNA (747bp) protein (249aa)
Surface antigen (D15) Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3EQW8_CHLPB
surface antigen (D15)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2826_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(773..1921)
DNA (1149bp) protein (383aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GT83_9BACT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2826_3
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1918..2379)
DNA (462bp) protein (154aa)
Large-conductance mechanosensitive channel Tax=gamma proteobacterium NOR5-3 RepID=B8KPS3_9GAMM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
mscL; MscL
PLM4_65_b1_redo_sep16_scaffold_2826_4
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

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comp(2413..2829)
DNA (417bp) protein (139aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
PLM4_65_b1_redo_sep16_scaffold_2826_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(2899..3417)
DNA (519bp) protein (173aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027H9_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82834.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_2826_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(3462..3692)
DNA (231bp) protein (77aa)
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC16_GEMAT
protein kinase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_2826_7
unknown

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comp(3696..4286)
DNA (591bp) protein (197aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2826_8
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4283..4798)
DNA (516bp) protein (172aa)
Bifunctional deaminase-reductase domain protein Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GLT2_9FIRM
dihydrofolate reductase
Dihydrofolate reductase {ECO:0000313|EMBL:AHF06004.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
PLM4_65_b1_redo_sep16_scaffold_2826_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4838..5113)
DNA (276bp) protein (92aa)
Protein of unknown function DUF3303
Uncharacterized protein {ECO:0000313|EMBL:AHG88088.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PLM4_65_b1_redo_sep16_scaffold_2826_10
unknown

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comp(5169..5657)
DNA (489bp) protein (163aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2826_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5967..7502
DNA (1536bp) protein (512aa)
circadian clock protein KaiC (EC:2.7.11.1)
Putative circadian clock protein, KaiC Tax=Geobacter sp. (strain FRC-32) RepID=B9M6C3_GEOSF bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_2826_12
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7499..7843
DNA (345bp) protein (115aa)
Circadian oscillation regulator KaiB Tax=Methanosarcina mazei Tuc01 RepID=M1Q8L5_METMZ
thiol-disulfide isomerase
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
PLM4_65_b1_redo_sep16_scaffold_2826_13
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

7863..9086
DNA (1224bp) protein (408aa)
PAS domain-containing protein,histidine kinase Tax=Opitutaceae bacterium TAV1 RepID=I6AQP4_9BACT
PAS domain-containing protein,histidine kinase {ECO:0000313|EMBL:EIP97335.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
histidine kinase
PLM4_65_b1_redo_sep16_scaffold_2826_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9171..9791
DNA (621bp) protein (207aa)
two-component response regulator Tax=Gemmata obscuriglobus RepID=UPI00016C48EF
putative two-component response regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_2826_15
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

9947..10588
DNA (642bp) protein (214aa)
two-component system response regulator bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
LuxR family transcriptional regulator
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_65_b1_redo_sep16_scaffold_2826_16
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

10563..11294
DNA (732bp) protein (244aa)
Two component transcriptional regulator, LuxR family Tax=Thermobacillus composti KWC4 RepID=G4EA54_9BACL bin=RAAC39 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RAAC39 organism_group=Ignavibacteria
LuxR family transcriptional regulator
Tax=RBG_13_Ignavibacteria_36_8_curated
PLM4_65_b1_redo_sep16_scaffold_2826_17
unknown

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11307..11546
DNA (240bp) protein (80aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2826_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11675..12166
DNA (492bp) protein (164aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93685.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_2826_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12254..12673
DNA (420bp) protein (140aa)
Putative peptidoglycan-associated lipoprotein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F8_GEMAT
pal; putative peptidoglycan-associated lipoprotein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_2826_20
unknown

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12760..13188
DNA (429bp) protein (143aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2826_21
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

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comp(13228..15336)
DNA (2109bp) protein (703aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein Tax=Pleurocapsa sp. PCC 7327 RepID=K9T5S3_9CYAN
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFY77491.1}; species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;" source="Pleurocapsa sp. PCC 7327.;"
PLM4_65_b1_redo_sep16_scaffold_2826_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15885..17114
DNA (1230bp) protein (410aa)
hypothetical protein Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037956AB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AHG93202.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_2826_23
unknown

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17293..17427
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2826_24
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17511..19064
DNA (1554bp) protein (518aa)
Peptidase M48 family protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH4_GEMAT
peptidase M48 family protein
Peptidase M48 family protein {ECO:0000313|EMBL:BAH40901.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Displaying 24 items

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