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PLM4_65_b1_redo_sep16_scaffold_5488

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5488_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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258..617
DNA (360bp) protein (120aa)
Sigma-24, ECF subfamily Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INR3_KORVE
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CDM66561.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM4_65_b1_redo_sep16_scaffold_5488_2
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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705..1628
DNA (924bp) protein (308aa)
Putative phosphohydrolase Tax=Herbaspirillum sp. CF444 RepID=J2LKC3_9BURK
Putative phosphohydrolase {ECO:0000313|EMBL:EJL92655.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5488_3
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1633..2010
DNA (378bp) protein (126aa)
soxH; putative cytochrome C oxidase polypeptide II oxidoreductase protein (EC:1.7.2.4)
Heme/copper-type cytochrome/quinol oxidase, subunit 2 Tax=Herbaspirillum sp. CF444 RepID=J3DII3_9BURK
Heme/copper-type cytochrome/quinol oxidase, subunit 2 {ECO:0000313|EMBL:EJL92656.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
PLM4_65_b1_redo_sep16_scaffold_5488_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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2254..2775
DNA (522bp) protein (174aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIF1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43349.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_5488_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3280..5067
DNA (1788bp) protein (596aa)
Tetratricopeptide repeat protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE73_CHLTF
Tetratricopeptide repeat {ECO:0000313|EMBL:CDM65364.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5488_6
CG_Omnitr_01, Omnitrophica, Bacteria

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5209..5490
DNA (282bp) protein (94aa)
Nodulation protein nfeD Tax=Pyrococcus furiosus RepID=Q8U0Q2_PYRFU
nodulation protein nfeD
Tax=CG_Omnitr_01
PLM4_65_b1_redo_sep16_scaffold_5488_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6074..7693
DNA (1620bp) protein (540aa)
Apolipoprotein N-acyltransferase {ECO:0000256|SAAS:SAAS00250216}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00088950};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
apolipoprotein N-acyltransferase (EC:2.3.1.-)
Apolipoprotein N-acyltransferase bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
PLM4_65_b1_redo_sep16_scaffold_5488_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7779..8849
DNA (1071bp) protein (357aa)
Bacterial peptide chain release factor 2 (BRF-2) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLV6_CHLTF
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptide chain release factor 2 (bRF-2)
PLM4_65_b1_redo_sep16_scaffold_5488_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8950..11502
DNA (2553bp) protein (851aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036794DB
DNA segregation ATPase, FtsK/SpoIIIE family {ECO:0000313|EMBL:CDM65359.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA translocase FtsK
PLM4_65_b1_redo_sep16_scaffold_5488_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12275..12715
DNA (441bp) protein (147aa)
Bacillithiol system oxidoreductase, YphP/YqiW family {ECO:0000313|EMBL:CDM66667.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein of unknown function DUF1094
PLM4_65_b1_redo_sep16_scaffold_5488_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(12890..13321)
DNA (432bp) protein (144aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E5FD0
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_5488_12
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

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comp(13402..13878)
DNA (477bp) protein (159aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X47_SOLUE
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
Displaying 12 items

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