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PLM4_65_b1_redo_sep16_scaffold_7893

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7893_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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81..1271
DNA (1191bp) protein (397aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Acetyl-CoA carboxylase, biotin carboxylase Tax=Thermincola potens (strain JR) RepID=D5X7J8_THEPJ
acetyl-CoA carboxylase, biotin carboxylase
PLM4_65_b1_redo_sep16_scaffold_7893_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1361..1603
DNA (243bp) protein (81aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDM66143.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDM66143.1};; EC=6.4.1.2 {ECO:0000313|EMBL:CDM66143.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Acetyl-CoA carboxylase, biotin carboxylase subunit Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AG31_FLELS
acetyl-CoA carboxylase, biotin carboxylase subunit
PLM4_65_b1_redo_sep16_scaffold_7893_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1689..1985
DNA (297bp) protein (99aa)
50S ribosomal protein L21 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=RL21_DESAD
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L21
PLM4_65_b1_redo_sep16_scaffold_7893_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2080..2352
DNA (273bp) protein (91aa)
50S ribosomal protein L27 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PB01_DEFDS
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpmA; 50S ribosomal protein L27
PLM4_65_b1_redo_sep16_scaffold_7893_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2433..3479
DNA (1047bp) protein (349aa)
GTPase Obg Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=OBG_ACIC5
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
obgE; GTPase ObgE
PLM4_65_b1_redo_sep16_scaffold_7893_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3555..4241
DNA (687bp) protein (229aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000256|SAAS:SAAS00086517};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE34_CHLTF
PLM4_65_b1_redo_sep16_scaffold_7893_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4231..4710
DNA (480bp) protein (160aa)
Ribosomal silencing factor RsfS Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVS3_KORVE
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Iojap-related protein
PLM4_65_b1_redo_sep16_scaffold_7893_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4707..5645
DNA (939bp) protein (313aa)
Sigma-54 interaction domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIK9_CHLTF
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM66149.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma-54 interaction domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_7893_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5649..6167
DNA (519bp) protein (173aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00094203};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Ribosomal RNA large subunit methyltransferase H Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=RLMH_GEODF
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7893_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6218..6586
DNA (369bp) protein (123aa)
Transcriptional regulator, TraR/DksA family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:CDM66151.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TraR/DksA family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_7893_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6768..7520
DNA (753bp) protein (251aa)
Putative amidophosphoribosyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF28_CHLTF
Predicted amidophosphoribosyltransferase {ECO:0000313|EMBL:CDM66152.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative amidophosphoribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_7893_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7586..8545
DNA (960bp) protein (320aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Proline iminopeptidase Tax=Pleurocapsa sp. PCC 7327 RepID=K9T227_9CYAN
proline iminopeptidase
PLM4_65_b1_redo_sep16_scaffold_7893_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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8640..9167
DNA (528bp) protein (176aa)
HNH endonuclease Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIU9_KORVE
Restriction endonuclease {ECO:0000313|EMBL:CDM66215.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
HNH endonuclease
PLM4_65_b1_redo_sep16_scaffold_7893_14
Corynebacterium jeikeium, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9223..9423
DNA (201bp) protein (67aa)
Sec-independent protein translocase protein TatA Tax=Corynebacterium jeikeium (strain K411) RepID=TATA_CORJK
tatA; sec-independent protein translocase
Sec-independent protein translocase protein TatA {ECO:0000255|HAMAP-Rule:MF_00236}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium jeikeium (strain K411).;"
PLM4_65_b1_redo_sep16_scaffold_7893_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(9466..10281)
DNA (816bp) protein (272aa)
Glr2042 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NIZ0_GLOVI
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CDM65943.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7893_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(10424..11659)
DNA (1236bp) protein (412aa)
AAA ATPase Tax=Singulisphaera acidiphila RepID=L0DBF5_SINAD
AAA ATPase
AAA ATPase {ECO:0000313|EMBL:AGA26190.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_7893_17
unknown

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11927..12142
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 17 items

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