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PLM4_65_b1_redo_sep16_scaffold_10963

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_10963_1
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1189)
DNA (1188bp) protein (396aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu Tax=Elioraea tepidiphila RepID=UPI00037A64E0
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
PLM4_65_b1_redo_sep16_scaffold_10963_trna_2
unknown

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comp(1270..1347)
DNA (78bp)
transferRNA Gly
PLM4_65_b1_redo_sep16_scaffold_10963_trna_1
unknown

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comp(1412..1493)
DNA (82bp)
transferRNA Tyr
PLM4_65_b1_redo_sep16_scaffold_10963_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1720..2595
DNA (876bp) protein (292aa)
hypothetical protein Tax=Novispirillum itersonii RepID=UPI000370EDD5
Ribosomal large subunit pseudouridine synthase {ECO:0000313|EMBL:KJB94129.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TrmH family RNA methyltransferase
PLM4_65_b1_redo_sep16_scaffold_10963_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2625..3398
DNA (774bp) protein (258aa)
Ca2+ sensor (EF-Hand superfamily) Tax=Sphingobium japonicum BiD32 RepID=N1MG59_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE56269.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
EF hand repeat-containing protein
PLM4_65_b1_redo_sep16_scaffold_10963_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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3542..4741
DNA (1200bp) protein (400aa)
ABC transporter substrate binding protein (Branched amino acid) Tax=Magnetospirillum sp. SO-1 RepID=M2YDA3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETW98378.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
extracellular ligand-binding receptor
PLM4_65_b1_redo_sep16_scaffold_10963_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4978..6177
DNA (1200bp) protein (400aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI00037F5ED7
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_10963_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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6276..7148
DNA (873bp) protein (291aa)
ABC transporter permease Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003761318
High-affinity branched-chain amino acid transport system permease protein LivH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_10963_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7145..8149
DNA (1005bp) protein (335aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00030E5490
Branched-chain amino acid transport system permease protein LivM
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_10963_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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8149..8904
DNA (756bp) protein (252aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00037118FC
Hemolysin III {ECO:0000313|EMBL:ETW98375.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative ATP-binding ABC transporter protein
PLM4_65_b1_redo_sep16_scaffold_10963_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8897..9364
DNA (468bp) protein (156aa)
branched-chain amino acid ABC transporter Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00035F59ED
Branched-chain amino acid transport ATP-binding protein LivF
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying 11 items

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