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PLM4_65_b1_redo_sep16_scaffold_3583

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3583_1
bacterium YEK0313, Bacteria

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comp(360..1256)
DNA (897bp) protein (299aa)
NADH-dependent gamma-hydroxybutyrate dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2JW25_9PROT
2-(Hydroxymethyl)glutarate dehydrogenase {ECO:0000313|EMBL:CEJ16275.1}; species="Bacteria.;" source="bacterium YEK0313.;"
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein
PLM4_65_b1_redo_sep16_scaffold_3583_2
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1368..2024
DNA (657bp) protein (219aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM04804.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibacterium.;" source="Roseibacterium elongatum DSM 19469.;"
PLM4_65_b1_redo_sep16_scaffold_3583_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2028..3815)
DNA (1788bp) protein (596aa)
VanW family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CVV8_9BACT
VanW family protein {ECO:0000313|EMBL:EDY21550.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
vanw family protein
PLM4_65_b1_redo_sep16_scaffold_3583_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3930..5420
DNA (1491bp) protein (497aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002FC3CAD
multidrug efflux protein
Putative multidrug efflux protein {ECO:0000313|EMBL:BAF89369.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM4_65_b1_redo_sep16_scaffold_3583_5
unknown

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5554..5808
DNA (255bp) protein (85aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3583_6
unknown

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5829..6410
DNA (582bp) protein (194aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3583_7
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6530..7270
DNA (741bp) protein (247aa)
hypothetical protein, hydrolase-like protein
Uncharacterized protein {ECO:0000313|EMBL:AII86487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
id=5080142 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
PLM4_65_b1_redo_sep16_scaffold_3583_8
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7298..8371)
DNA (1074bp) protein (358aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P332_DESSD
putative ABC-type transport system, periplasmic component/surface lipoprotein
Putative ABC-type transport system, periplasmic component/surface lipoprotein {ECO:0000313|EMBL:AGF77883.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
PLM4_65_b1_redo_sep16_scaffold_3583_9
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8413..9345)
DNA (933bp) protein (311aa)
Inner-membrane translocator Tax=Rhodospirillum photometricum DSM 122 RepID=H6SK01_RHOPH
Inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:CCG08316.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
PLM4_65_b1_redo_sep16_scaffold_3583_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9469..10557)
DNA (1089bp) protein (363aa)
Putative ABC transporter permease component Tax=Azospirillum brasilense Sp245 RepID=G8AKQ1_AZOBR
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:AIB12058.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_3583_11
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10547..12088)
DNA (1542bp) protein (514aa)
ABC transporter ATP-binding protein Tax=Pseudomonas aeruginosa M8A.4 RepID=U9ECB4_PSEAI
ABC transporter family protein
Sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ELS26854.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
PLM4_65_b1_redo_sep16_scaffold_3583_12
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12215..12772
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2LRB9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJE34783.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3583_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12915..13868
DNA (954bp) protein (318aa)
Zinc ABC transporter periplasmic substrate-binding component Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZGM8_AZOL4
znuA; zinc ABC transporter; periplasmic substrate-binding component
Zinc ABC transporter periplasmic substrate-binding component {ECO:0000313|EMBL:CBS90997.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_3583_14
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14188..15252
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Asticcacaulis sp. AC460 RepID=V4PR37_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ87980.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
putative transmembrane protein
PLM4_65_b1_redo_sep16_scaffold_3583_15
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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comp(15256..16026)
DNA (771bp) protein (257aa)
High-affinity nickel-transporter bin=GWE2_RBX1_39_32 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
putative high-affinity nickel-transporter
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_3583_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16235..16705
DNA (471bp) protein (157aa)
ABC transporter periplasmic protein Tax=Oceanibaculum indicum P24 RepID=K2JR29_9PROT
ABC transporter periplasmic protein {ECO:0000313|EMBL:EKE77773.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ABC transporter
Displaying 16 items

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