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PLM4_65_b1_redo_sep16_scaffold_858

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_858_1
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..271
DNA (270bp) protein (90aa)
Aldolase Tax=Ralstonia sp. AU12-08 RepID=S9RTA0_9RALS
aldolase
Aldolase {ECO:0000313|EMBL:AJW43710.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
PLM4_65_b1_redo_sep16_scaffold_858_2
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

386..1408
DNA (1023bp) protein (341aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI000373E2FD
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EAR62202.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesariensis.;"
TRAP dicarboxylate transporter subunit DctP
PLM4_65_b1_redo_sep16_scaffold_858_3
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1470..2069
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Halomonas sp. A3H3 RepID=T2L7C6_9GAMM
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:EWG99364.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
C4-dicarboxylate ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_858_4
Marinomonas sp. MWYL1, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2112..3431
DNA (1320bp) protein (440aa)
C4-dicarboxylate ABC transporter permease Tax=Amphritea japonica RepID=UPI000363EB50
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ABR71998.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. (strain MWYL1).;"
PLM4_65_b1_redo_sep16_scaffold_858_5
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3465..4181
DNA (717bp) protein (239aa)
O-methyltransferase family protein (EC:2.1.1.104)
Putative O-methyltransferase Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GPR8_9CYAN
Putative O-methyltransferase {ECO:0000313|EMBL:EKQ71002.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
PLM4_65_b1_redo_sep16_scaffold_858_6
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4264..4683
DNA (420bp) protein (140aa)
4-hydroxybenzoyl-CoA thioesterase (EC:3.1.2.23)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002F85768
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM4_65_b1_redo_sep16_scaffold_858_7
unknown

Not on your lists

comp(4715..4846)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_858_8
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4940..5290
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Fulvivirga imtechensis AK7 RepID=L8JT41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR70659.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_858_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5372..5497
DNA (126bp) protein (42aa)
50S ribosomal protein L36 Tax=uncultured verrucomicrobium HF0130_25O04 RepID=E7C360_9BACT
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
rpmJ; 50S ribosomal protein L36
PLM4_65_b1_redo_sep16_scaffold_858_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5570..7057
DNA (1488bp) protein (496aa)
D-lactate dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2J2T2_9PROT
D-lactate dehydrogenase {ECO:0000313|EMBL:EKE69408.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
glcD; glycolate oxidase, subunit GlcD
PLM4_65_b1_redo_sep16_scaffold_858_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7057..8412
DNA (1356bp) protein (452aa)
Glycolate oxidase FAD binding subunit Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EWZ8_9RHIZ
Glycolate oxidase FAD binding subunit {ECO:0000313|EMBL:CCV08500.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
FAD linked oxidase domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_858_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8522..10438
DNA (1917bp) protein (639aa)
probable adenylate class-3/4/guanylyl cyclase (EC:4.6.1.1)
Probable adenylate class-3/4/guanylyl cyclase {ECO:0000313|EMBL:CCE98603.1}; EC=4.6.1.1 {ECO:0000313|EMBL:CCE98603.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Probable adenylate class-3/4/guanylyl cyclase Tax=Rhizobium fredii (strain HH103) RepID=G9AC24_RHIFH
PLM4_65_b1_redo_sep16_scaffold_858_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10446..10901)
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Rhizobium fredii (strain HH103) RepID=G9AC23_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE98602.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
PLM4_65_b1_redo_sep16_scaffold_858_14
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11072..12364
DNA (1293bp) protein (431aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JW03_9PROT
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_858_15

Not on your lists

12720..13688
DNA (969bp) protein (323aa)
Putative Sulfite oxidase Tax=uncultured organism RepID=Q1EI07_9ZZZZ
Putative Sulfite oxidase {ECO:0000313|EMBL:CAK32603.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
oxidoreductase molybdopterin binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_858_16
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13713..15119)
DNA (1407bp) protein (469aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3M9_RHOP2
amidase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_65_b1_redo_sep16_scaffold_858_17
unknown

Not on your lists

comp(15116..15352)
DNA (237bp) protein (79aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_858_18
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15660..16580)
DNA (921bp) protein (307aa)
Redox-sensitive transcriptional activator Tax=Magnetospirillum gryphiswaldense RepID=A4TY54_9PROT
putative transcriptional regulatory protein, LysR family
Redox-sensitive transcriptional activator {ECO:0000313|EMBL:CAM75561.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
PLM4_65_b1_redo_sep16_scaffold_858_19
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16577..17551)
DNA (975bp) protein (325aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Thioredoxin reductase Tax=Azospirillum brasilense Sp245 RepID=G8AGK1_AZOBR
thioredoxin reductase
PLM4_65_b1_redo_sep16_scaffold_858_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(17721..18008)
DNA (288bp) protein (96aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NG55_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU56442.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM4_65_b1_redo_sep16_scaffold_858_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18026..19933)
DNA (1908bp) protein (636aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JYJ0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE70310.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_858_22
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20040..20681)
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INZ2_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI99412.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_858_23
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20849..21508
DNA (660bp) protein (220aa)
Putative transcriptional regulator, TetR family Tax=Azospirillum brasilense Sp245 RepID=G8AJV6_AZOBR
TetR family transcriptional regulator
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:CCC97518.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM4_65_b1_redo_sep16_scaffold_858_24
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21492..22310
DNA (819bp) protein (273aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2A5_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS87520.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_858_25
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22307..23293
DNA (987bp) protein (329aa)
ABC-type multidrug transport system Tax=Magnetospirillum sp. SO-1 RepID=M3AFM0_9PROT
ABC-type multidrug transport system {ECO:0000313|EMBL:EME71608.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
ABC-type multidrug transport system
PLM4_65_b1_redo_sep16_scaffold_858_26
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23290..24423
DNA (1134bp) protein (378aa)
Antibiotic transport system permease protein Tax=Azospirillum sp. (strain B510) RepID=D3NX30_AZOS1
mannose-1-phosphate guanyltransferase
Mannose-1-phosphate guanyltransferase {ECO:0000313|EMBL:AIB12299.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_858_27
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24454..25446)
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3NR66_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI70895.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_858_28
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25572..26078
DNA (507bp) protein (169aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI0003664539
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EHM02274.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
asnC; AsnC family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_858_29
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26133..26606)
DNA (474bp) protein (158aa)
Transcription elongation factor GreA Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INY8_RHOCS
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_858_30
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26791..30069)
DNA (3279bp) protein (1093aa)
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Carbamoyl-phosphate synthase large chain Tax=Azospirillum sp. (strain B510) RepID=D3NR71_AZOS1
Displaying items 1-30 of 34 in total

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