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PLM4_65_b1_redo_sep16_scaffold_885

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_885_1
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..503)
DNA (501bp) protein (167aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
putative protein methyltransferase hemK modifies release factors RF-1 and RF-2 (EC:2.1.1.-)
Release factor glutamine methyltransferase Tax=Oceanibaculum indicum P24 RepID=K2IPX6_9PROT
PLM4_65_b1_redo_sep16_scaffold_885_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(590..1666)
DNA (1077bp) protein (359aa)
peptide chain release factor 1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B1B9
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
prfA; peptide chain release factor RF-1
PLM4_65_b1_redo_sep16_scaffold_885_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1663..2985)
DNA (1323bp) protein (441aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Glutamyl-tRNA reductase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6J7_AZOL4
gtrA; glutamyl tRNA reductase
PLM4_65_b1_redo_sep16_scaffold_885_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2982..4220)
DNA (1239bp) protein (413aa)
hisS; histidyl-tRNA ligase (EC:6.1.1.21)
Histidine--tRNA ligase Tax=Oceanibaculum indicum P24 RepID=K2JAM3_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_885_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4385..5524)
DNA (1140bp) protein (380aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=Oceanibaculum indicum P24 RepID=K2JBM9_9PROT
PLM4_65_b1_redo_sep16_scaffold_885_6
Acetobacter orientalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5656..6540)
DNA (885bp) protein (295aa)
Putative uncharacterized protein Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I4E1_GLUXN
Uncharacterized protein {ECO:0000313|EMBL:GAN66677.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter orientalis 21F-2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_885_7
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6844..9183)
DNA (2340bp) protein (780aa)
ptsI; phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase, putative {ECO:0000313|EMBL:ACJ00019.1}; EC=2.7.3.9 {ECO:0000313|EMBL:ACJ00019.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Phosphoenolpyruvate-protein phosphotransferase, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUT7_RHOCS
PLM4_65_b1_redo_sep16_scaffold_885_8
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9336..10550)
DNA (1215bp) protein (405aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Aspartokinase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W6V9_MAGSA
aspartate kinase
PLM4_65_b1_redo_sep16_scaffold_885_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10709..11518
DNA (810bp) protein (270aa)
hypothetical protein Tax=Novispirillum itersonii RepID=UPI00037B94ED
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ubiquinone biosynthesis O-methyltransferase
PLM4_65_b1_redo_sep16_scaffold_885_10
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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11572..12153
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Lentisphaera araneosa HTCC2155 RepID=A6DN65_9BACT
Zeta toxin family protein {ECO:0000313|EMBL:KHL18691.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_885_11
unknown

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12107..12373
DNA (267bp) protein (89aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_885_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12370..12597
DNA (228bp) protein (76aa)
SirA family protein Tax=Elioraea tepidiphila RepID=UPI00037C5DC0
Response regulator SirA {ECO:0000313|EMBL:KJB96850.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SirA family protein
PLM4_65_b1_redo_sep16_scaffold_885_13
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12597..13850
DNA (1254bp) protein (418aa)
Sensor protein gacS Tax=sulfur-oxidizing symbionts RepID=G2DDG3_9GAMM
nucleoside permease
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_65_b1_redo_sep16_scaffold_885_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13867..14853)
DNA (987bp) protein (329aa)
acmD; amidohydrolase, similiar to 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC:4.1.1.45)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like protein Tax=Hydrogenophaga sp. PBC RepID=I4MS88_9BURK
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_b1_redo_sep16_scaffold_885_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14865..15983)
DNA (1119bp) protein (373aa)
Putative FAD dependent oxidoreductase Tax=Oceanibaculum indicum P24 RepID=K2IIA9_9PROT
FAD-dependent oxidoreductase
FAD-dependent oxidoreductase {ECO:0000313|EMBL:AIB14611.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_885_16
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15988..19143)
DNA (3156bp) protein (1052aa)
Acriflavin resistance protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLR0_ACCPU
acriflavin resistance protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_885_17
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19201..20424)
DNA (1224bp) protein (408aa)
Efflux transporter, RND family, MFP subunit Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJ87_DESAR
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_885_18
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20628..21557
DNA (930bp) protein (310aa)
Histone deacetylase superfamily protein Tax=alpha proteobacterium BAL199 RepID=A8U2X6_9PROT
Histone deacetylase superfamily protein {ECO:0000313|EMBL:EDP61486.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative deacetylase; histone deacetylase superfamily
PLM4_65_b1_redo_sep16_scaffold_885_19
RLO_OD1_Kaiserbacteria_50_10, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(21562..21993)
DNA (432bp) protein (144aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Kaiserbacteria_50_10_curated
PLM4_65_b1_redo_sep16_scaffold_885_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21990..25112)
DNA (3123bp) protein (1041aa)
Cation efflux system protein cusA Tax=Bradyrhizobium sp. ORS 285 RepID=H0S727_9BRAD
Cation efflux system protein CusA {ECO:0000313|EMBL:CDH47824.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
cusA; cation efflux system protein cusA
PLM4_65_b1_redo_sep16_scaffold_885_21
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25109..26380)
DNA (1272bp) protein (424aa)
Heavy metal RND efflux membrane fusion protein, CzcB family Tax=Pseudomonas stutzeri RepID=A4VPT9_PSEU5
CzcB family heavy metal RND efflux membrane fusion protein
CzcB family heavy metal RND efflux membrane fusion protein {ECO:0000313|EMBL:EPL61509.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
PLM4_65_b1_redo_sep16_scaffold_885_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27026..27277
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Exodeoxyribonuclease 7 small subunit Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZEC1_AZOL4
xseB; Exonuclease VII small subunit
PLM4_65_b1_redo_sep16_scaffold_885_23
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27289..28215
DNA (927bp) protein (309aa)
ispA; geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:ACI98000.1}; EC=2.5.1.10 {ECO:0000313|EMBL:ACI98000.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Geranylgeranyl pyrophosphate synthase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRB4_RHOCS
PLM4_65_b1_redo_sep16_scaffold_885_24
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28273..30201
DNA (1929bp) protein (643aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=DXS_RHOCS
PLM4_65_b1_redo_sep16_scaffold_885_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30393..31817
DNA (1425bp) protein (475aa)
MATE efflux family protein Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07SR7_RHOP5
Multidrug transporter MatE {ECO:0000313|EMBL:KJC61734.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
MATE efflux family protein
PLM4_65_b1_redo_sep16_scaffold_885_26
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31844..32572
DNA (729bp) protein (243aa)
Hemolysin A, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRB9_RHOCS
tlyA; hemolysin A
Hemolysin A, putative {ECO:0000313|EMBL:ACI98005.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Displaying 26 items

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