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PLM4_65_b1_redo_sep16_scaffold_886

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_886_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..816)
DNA (816bp) protein (272aa)
GTPase Era Tax=Azospirillum brasilense Sp245 RepID=G8APX4_AZOBR
GTPase Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_886_2
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(785..1537)
DNA (753bp) protein (251aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Ribonuclease 3 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKZ7_TISMK
RNAse III
PLM4_65_b1_redo_sep16_scaffold_886_3
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1816..2658)
DNA (843bp) protein (281aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Signal peptidase I (EC:3.4.21.89)
Signal peptidase I (SPase I) (Leader peptidase I) Tax=Phaeospirillum molischianum DSM 120 RepID=H8FXM5_PHAMO
PLM4_65_b1_redo_sep16_scaffold_886_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2684..3478)
DNA (795bp) protein (265aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993, ECO:0000313|EMBL:CDO61387.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993, ECO:0000313|EMBL:CDO61387.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Signal peptidase I Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TMS2_PHAFV
Signal peptidase I
PLM4_65_b1_redo_sep16_scaffold_886_5
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3504..4334)
DNA (831bp) protein (277aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Signal peptidase I Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W514_MAGSA
Signal peptidase I
PLM4_65_b1_redo_sep16_scaffold_886_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4467..4874)
DNA (408bp) protein (136aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
holo-acyl-carrier-protein synthase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=ACPS_BEII9
PLM4_65_b1_redo_sep16_scaffold_886_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5040..5927)
DNA (888bp) protein (296aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Pyridoxine 5'-phosphate synthase Tax=Oceanibaculum indicum P24 RepID=K2JJ74_9PROT
pdxJ; pyridoxine 5'-phosphate synthase
PLM4_65_b1_redo_sep16_scaffold_886_8
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5998..8139)
DNA (2142bp) protein (714aa)
Guanosine polyphosphate pyrophosphohydrolase/synthetase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W518_MAGSA
GTP pyrophosphokinase (P)ppGpp synthetase II / Guanosine-3' 5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:KIL98724.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
guanosine polyphosphate pyrophosphohydrolase/synthetase
PLM4_65_b1_redo_sep16_scaffold_886_9
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8389..8799)
DNA (411bp) protein (137aa)
DNA-directed RNA polymerase subunit omega Tax=Caenispirillum salinarum AK4 RepID=K9H310_9PROT
rpoZ2; RNA polymerase subunit omega
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM4_65_b1_redo_sep16_scaffold_886_10
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8937..9752)
DNA (816bp) protein (272aa)
Serine/threonine-protein kinase pkn1 {ECO:0000313|EMBL:KFB77109.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KFB77109.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
Uncharacterized protein Tax=Nitrobacter sp. Nb-311A RepID=A3WUH2_9BRAD
sulfatase-modifying factor protein
PLM4_65_b1_redo_sep16_scaffold_886_11
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9734..10363)
DNA (630bp) protein (210aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZS5_METPS
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_60_28_curated
PLM4_65_b1_redo_sep16_scaffold_886_12
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10464..10958)
DNA (495bp) protein (165aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=Caenispirillum salinarum AK4 RepID=K9HM67_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJV08371.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
PLM4_65_b1_redo_sep16_scaffold_886_13
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11099..11734
DNA (636bp) protein (212aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN09_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI98906.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_886_14
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11814..12461
DNA (648bp) protein (216aa)
Uracil-DNA glycosylase superfamily Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN10_RHOCS
uracil-DNA glycosylase superfamily
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ACI98907.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_886_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12493..13593)
DNA (1101bp) protein (367aa)
Putative methionine synthase II (Cobalamin-independent) Tax=Modestobacter marinus (strain BC501) RepID=I4F1Y6_MODMB
methionine synthase II (Cobalamin-independent)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_886_16

Not on your lists

comp(13789..15132)
DNA (1344bp) protein (448aa)
Putative phenylacetate-CoA ligase Tax=uncultured bacterium 1116 RepID=B8R903_9BACT
Putative phenylacetate-CoA ligase {ECO:0000313|EMBL:ACF98159.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 1116.;"
phenylacetate-coenzyme A ligase
PLM4_65_b1_redo_sep16_scaffold_886_17
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15269..15952
DNA (684bp) protein (228aa)
Transcriptional regulator tetR family Tax=consortium cosmid clone pGZ1 RepID=Q0MX88_9BACT
TetR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_886_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16006..17478
DNA (1473bp) protein (491aa)
NADH:flavin oxidoreductase, old yellow enzyme family Tax=Luminiphilus syltensis NOR5-1B RepID=B8KT97_9GAMM
NADH oxidase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_b1_redo_sep16_scaffold_886_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17689..18159)
DNA (471bp) protein (157aa)
SsrA-binding protein Tax=Oligotropha carboxidovorans RepID=SSRP_OLICO
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
smpB; SsrA-binding protein SmpB
PLM4_65_b1_redo_sep16_scaffold_886_20
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18285..19184)
DNA (900bp) protein (300aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
4-hydroxy-tetrahydrodipicolinate synthase Tax=Azospirillum amazonense Y2 RepID=G1XZ26_9PROT
dihydrodipicolinate synthase
PLM4_65_b1_redo_sep16_scaffold_886_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19459..21507
DNA (2049bp) protein (683aa)
Putative lytic transglycosylase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z654_AZOL4
putative lytic transglycosylase
Putative lytic transglycosylase {ECO:0000313|EMBL:CBS86428.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_886_22
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21575..23830
DNA (2256bp) protein (752aa)
Soluble lytic murein transglycosylase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TTJ9_PHAFV
Uncharacterized protein {ECO:0000313|EMBL:KJS44228.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
soluble lytic murein transglycosylase and related regulatory protein
PLM4_65_b1_redo_sep16_scaffold_886_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23934..24614
DNA (681bp) protein (227aa)
Haloacid dehalogenase, type II Tax=Afipia sp. 1NLS2 RepID=D6V542_9BRAD
haloacid dehalogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_886_24
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24630..25628
DNA (999bp) protein (333aa)
Serine/threonine dehydratase {ECO:0000313|EMBL:EWY40190.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EWY40190.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
serine/threonine dehydratase (EC:4.3.1.19)
Putative threonine dehydratase Tax=alpha proteobacterium BAL199 RepID=A8TLW0_9PROT
PLM4_65_b1_redo_sep16_scaffold_886_25
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25713..26213)
DNA (501bp) protein (167aa)
Integral membrane protein CcmA involved in cell shape determination Tax=Rhodobacteraceae bacterium HIMB11 RepID=U4UUW4_9RHOB
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CDO60920.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein DUF583
PLM4_65_b1_redo_sep16_scaffold_886_26
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26197..27711)
DNA (1515bp) protein (505aa)
Peptidase M23B Tax=alpha proteobacterium BAL199 RepID=A8TLV8_9PROT
Peptidase M23B {ECO:0000313|EMBL:EDP66185.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
peptidase M23B
PLM4_65_b1_redo_sep16_scaffold_886_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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28196..29194
DNA (999bp) protein (333aa)
NAD(P)H quinone oxidoreductase Tax=Fodinicurvata sediminis RepID=UPI0003B36C93
quinone oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_b1_redo_sep16_scaffold_886_28
unknown

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comp(29344..29481)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_886_29
unknown

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30353..30577
DNA (225bp) protein (75aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_886_30
unknown

Not on your lists

comp(30612..30734)
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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