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PLM4_65_b1_redo_sep16_scaffold_8041

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_8041_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(420..1961)
DNA (1542bp) protein (514aa)
amidase (EC:3.5.1.4)
Amidase Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT00_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN78191.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
PLM4_65_b1_redo_sep16_scaffold_8041_2
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2039..2728)
DNA (690bp) protein (230aa)
hypothetical protein Tax=Methylobacterium sp. 77 RepID=UPI0003680FD6
Urea ABC transporter, ATP-binding protein
Urea ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AIQ93238.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
PLM4_65_b1_redo_sep16_scaffold_8041_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2721..3452)
DNA (732bp) protein (244aa)
urea ABC transporter Tax=Methylobacterium sp. 77 RepID=UPI00037951BD
ABC transporter {ECO:0000313|EMBL:GAN77296.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Putative branched-chain amino acid ABC transporter, ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_8041_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3449..4444)
DNA (996bp) protein (332aa)
Branched-chain amino acid ABC transporter, permease protein Tax=Variovorax paradoxus B4 RepID=T1XM70_VARPD
branched-chain amino acid ABC transporter, permease protein
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU53693.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM4_65_b1_redo_sep16_scaffold_8041_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4441..5307)
DNA (867bp) protein (289aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI000360B764
branched-chain amino acid ABC transporter, permease protein
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU53692.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM4_65_b1_redo_sep16_scaffold_8041_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5315..6541)
DNA (1227bp) protein (409aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI000364B2C5
putative ABC transporter, branched-chain amino acid-binding protein
Putative ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU53691.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM4_65_b1_redo_sep16_scaffold_8041_7
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6630..7265)
DNA (636bp) protein (212aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI00036BCAB4
isochorismatase
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_65_b1_redo_sep16_scaffold_8041_8
unknown

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7882..8130
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8041_9
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8272..8988
DNA (717bp) protein (239aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002EF2618
GntR family transcriptional regulator
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_65_b1_redo_sep16_scaffold_8041_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..9459
DNA (402bp) protein (134aa)
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFS7_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_8041_11
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9456..10544
DNA (1089bp) protein (363aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI000382DD62
spermidine/putrescine ABC transporter ATPase
Spermidine/putrescine ABC transporter ATPase {ECO:0000313|EMBL:AJE97486.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
PLM4_65_b1_redo_sep16_scaffold_8041_12
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10557..11465
DNA (909bp) protein (303aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI000368095B
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:EJN02711.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
binding-protein-dependent transport systems inner membrane component
PLM4_65_b1_redo_sep16_scaffold_8041_13
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11458..12288
DNA (831bp) protein (277aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003723429
ABC transporter permease {ECO:0000313|EMBL:EHQ58981.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_8041_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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12353..13453
DNA (1101bp) protein (367aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003807117
Uncharacterized protein {ECO:0000313|EMBL:ETX00437.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
TIM-barrel fold metal-dependent hydrolase
PLM4_65_b1_redo_sep16_scaffold_8041_15
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13465..14802
DNA (1338bp) protein (446aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002E2BC29
Amidohydrolase {ECO:0000313|EMBL:EJO32452.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
amidohydrolase
PLM4_65_b1_redo_sep16_scaffold_8041_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14817..15626)
DNA (810bp) protein (270aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI000368D389
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_8041_17
Geobacillus sp. GHH01, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15694..16749)
DNA (1056bp) protein (352aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002DD0946
potD2; spermidine/putrescine ABC transporter substrate-binding protein
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:AGE23851.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. GHH01.;"
PLM4_65_b1_redo_sep16_scaffold_8041_18
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16897..17838
DNA (942bp) protein (314aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase {ECO:0000313|EMBL:ABP34583.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ABP34583.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 /; CIP 109841 / QLW-P1DMWA-1).;"
5-carboxymethyl-2-hydroxymuconate Delta-isomerase Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SYL9_POLSQ
PLM4_65_b1_redo_sep16_scaffold_8041_19
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

17851..18249
DNA (399bp) protein (133aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003684CB5
endoribonuclease L-PSP
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_b1_redo_sep16_scaffold_8041_20
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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comp(18461..18625)
DNA (165bp) protein (55aa)
Endoribonuclease L-PSP Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GM7_POLSJ
endoribonuclease L-PSP
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Displaying 20 items

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