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PLM4_65_b1_redo_sep16_scaffold_5897

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5897_1
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..1314)
DNA (1314bp) protein (438aa)
C4-dicarboxylate ABC transporter permease Tax=Azoarcus toluclasticus RepID=UPI000382B830
dctM3; putative TRAP-type C4-dicarboxylate transport system large permease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_b1_redo_sep16_scaffold_5897_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1319..1897)
DNA (579bp) protein (193aa)
Putative TRAP-type C4-dicarboxylate transport system, small permease component bin=GWF2_Methylomirabilis_70_14 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dctM; small permease
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_5897_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(1955..2926)
DNA (972bp) protein (324aa)
Candidate periplasmic component bin=GWA2_Methylomirabilis_73_35 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_b1_redo_sep16_scaffold_5897_4
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3017..3985)
DNA (969bp) protein (323aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00031881DE
TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_b1_redo_sep16_scaffold_5897_5
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4136..5218
DNA (1083bp) protein (361aa)
NAD/NADP octopine/nopaline dehydrogenase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002625D67
NAD/NADP octopine/nopaline dehydrogenase
NAD/NADP octopine/nopaline dehydrogenase {ECO:0000313|EMBL:AHV95652.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabinae T27.;"
PLM4_65_b1_redo_sep16_scaffold_5897_6
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(5227..6000)
DNA (774bp) protein (258aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.55)
3-hydroxyacyl-CoA dehydrogenase Tax=Halosarcina pallida JCM 14848 RepID=M0DF86_9EURY
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ELZ32829.1}; species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.;"
PLM4_65_b1_redo_sep16_scaffold_5897_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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6148..7137
DNA (990bp) protein (330aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V486_SPHWW
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_5897_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7362..8141
DNA (780bp) protein (260aa)
Putative 3-oxoacyl-acyl carrier protein reductase Tax=Nitratireductor indicus C115 RepID=K2P0U4_9RHIZ
Putative 3-oxoacyl-acyl carrier protein reductase {ECO:0000313|EMBL:EKF43814.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
short-chain dehydrogenase/reductase SDR
PLM4_65_b1_redo_sep16_scaffold_5897_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8363..9769
DNA (1407bp) protein (469aa)
Family 3 adenylate cyclase Tax=Microvirga sp. WSM3557 RepID=I4YL88_9RHIZ
guanylate/adenylate cyclase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_5897_10
unknown

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10199..10855
DNA (657bp) protein (219aa)
hypothetical protein Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B59A0C
PLM4_65_b1_redo_sep16_scaffold_5897_11
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10995..11291
DNA (297bp) protein (99aa)
hypothetical protein Tax=Methyloferula stellata RepID=UPI000370EDDA
transglycosylase-associated protein
Transglycosylase-associated protein {ECO:0000313|EMBL:ACK50034.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
PLM4_65_b1_redo_sep16_scaffold_5897_12
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11552..11722
DNA (171bp) protein (57aa)
Pilus subunit protein PilA Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDS1_PHEZH
flp/Fap pilin component family protein
Uncharacterized protein {ECO:0000313|EMBL:KCZ48363.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
PLM4_65_b1_redo_sep16_scaffold_5897_13
unknown

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comp(12122..12421)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5897_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12523..14067)
DNA (1545bp) protein (515aa)
Epimerase {ECO:0000313|EMBL:CCP13854.1}; EC=3.2.1.- {ECO:0000313|EMBL:CCP13854.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
Epimerase Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CS37_STEMA
murein transglycosylase
PLM4_65_b1_redo_sep16_scaffold_5897_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14197..15402)
DNA (1206bp) protein (402aa)
Murein transglycosylase Tax=Pseudomonas aeruginosa 19660 RepID=U9APZ8_PSEAI
putative murein transglycosylase
Murein transglycosylase {ECO:0000313|EMBL:EZP06929.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
PLM4_65_b1_redo_sep16_scaffold_5897_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15399..18854)
DNA (3456bp) protein (1152aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:EKE69523.1}; EC=1.2.7.8 {ECO:0000313|EMBL:EKE69523.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Indolepyruvate ferredoxin oxidoreductase Tax=Oceanibaculum indicum P24 RepID=K2J356_9PROT
indolepyruvate ferredoxin oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_5897_17
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18879..19349)
DNA (471bp) protein (157aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI0003769330
Major facilitator transporter {ECO:0000313|EMBL:EFO34399.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
monocarboxylate transporter
Displaying 17 items

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