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PLM4_65_b1_redo_sep16_scaffold_4233

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4233_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(115..537)
DNA (423bp) protein (141aa)
Lactoylglutathione lyase Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9Y7_PHEZH
lactoylglutathione lyase
Lactoylglutathione lyase {ECO:0000313|EMBL:ACG79491.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
PLM4_65_b1_redo_sep16_scaffold_4233_2
unknown

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comp(746..1159)
DNA (414bp) protein (138aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4233_3
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1294..2814)
DNA (1521bp) protein (507aa)
Glycosyl transferase family 2 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QUU5_SPILD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADB42577.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM4_65_b1_redo_sep16_scaffold_4233_4
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3008..3706)
DNA (699bp) protein (233aa)
Nucleoside phosphorylase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7K3_MAGSA
nucleoside phosphorylase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM4_65_b1_redo_sep16_scaffold_4233_5
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3718..5658)
DNA (1941bp) protein (647aa)
shc; Squalene--hopene cyclase (EC:5.4.99.17)
squalene--hopene cyclase Tax=Methylosinus sp. LW4 RepID=UPI0003613724
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_4233_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5765..7012)
DNA (1248bp) protein (416aa)
Amine oxidase Tax=Rhodospirillum rubrum RepID=G2TGG8_RHORU
Uncharacterized protein {ECO:0000313|EMBL:EWY37002.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
amine oxidase
PLM4_65_b1_redo_sep16_scaffold_4233_7
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7012..7872)
DNA (861bp) protein (287aa)
Putative squalene/phytoene synthase HpnD (EC:2.5.1.32)
Putative squalene/phytoene synthase HpnD {ECO:0000313|EMBL:CCQ73408.1}; EC=2.5.1.32 {ECO:0000313|EMBL:CCQ73408.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Putative phytoene synthase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S2Y8_PHAFV
PLM4_65_b1_redo_sep16_scaffold_4233_8
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7911..9080)
DNA (1170bp) protein (390aa)
Squalene-phytoene synthase Tax=Rhodospirillum rubrum RepID=G2TGG9_RHORU
squalene-phytoene synthase
Squalene-phytoene synthase {ECO:0000313|EMBL:ABC20869.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
PLM4_65_b1_redo_sep16_scaffold_4233_9
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9086..9937)
DNA (852bp) protein (284aa)
Squalene/phytoene synthase Tax=Rhodospirillum rubrum RepID=G2TGH0_RHORU
squalene/phytoene synthase
Squalene/phytoene synthase {ECO:0000313|EMBL:ABC20870.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
PLM4_65_b1_redo_sep16_scaffold_4233_10
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10280..11323
DNA (1044bp) protein (348aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Magnetospirillum sp. SO-1 RepID=M3A6H2_9PROT
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
PLM4_65_b1_redo_sep16_scaffold_4233_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11320..12444
DNA (1125bp) protein (375aa)
Queuine tRNA-ribosyltransferase Tax=Magnetospirillum sp. SO-1 RepID=M3A7D4_9PROT
queuine/archaeosine tRNA-ribosyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_4233_12
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

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12570..14375
DNA (1806bp) protein (602aa)
hypothetical protein bin=GWB2_Chloroflexi_54_36 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_b1_redo_sep16_scaffold_4233_13
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14418..14888
DNA (471bp) protein (157aa)
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
NADPH-dependent 7-cyano-7-deazaguanine reductase Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I3W5_RHOVT
PLM4_65_b1_redo_sep16_scaffold_4233_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14885..16186
DNA (1302bp) protein (434aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Epoxyqueuosine reductase Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPJ0_PARL1
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4233_15
Cycloclasticus sp. P1, Cycloclasticus, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16193..16474)
DNA (282bp) protein (94aa)
Acyl-CoA dehydrogenase domain protein Tax=Cycloclasticus sp. (strain P1) RepID=K0C6L3_CYCSP
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:AFT67266.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Cycloclasticus.;" source="Cycloclasticus sp. (strain P1).;"
Displaying 15 items

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