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PLM4_65_b1_redo_sep16_scaffold_4708

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4708_1
unknown

Not on your lists

comp(624..842)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4708_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..1779)
DNA (870bp) protein (290aa)
multidrug ABC transporter ATP-binding protein Tax=Rhizobium phaseoli RepID=UPI0002DA25FD
Uncharacterized protein {ECO:0000313|EMBL:KGM34345.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4708_3
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1829..2083)
DNA (255bp) protein (85aa)
membrane protein Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003AA39EF
Membrane protein {ECO:0000313|EMBL:ERL99591.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
transglycosylase-associated protein
PLM4_65_b1_redo_sep16_scaffold_4708_4
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2274..2447
DNA (174bp) protein (58aa)
hypothetical protein Tax=Methyloferula stellata RepID=UPI000369442C
CsbD-like protein {ECO:0000313|EMBL:KJS15694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
CsbD family protein
PLM4_65_b1_redo_sep16_scaffold_4708_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2570..3808
DNA (1239bp) protein (413aa)
Branched-chain amino acid transport system substrate-binding protein Tax=Azospirillum brasilense Sp245 RepID=G8ARP0_AZOBR
livK; branched-chain amino acid transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_65_b1_redo_sep16_scaffold_4708_6
unknown

Not on your lists

comp(4137..4550)
DNA (414bp) protein (138aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4708_7
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4704..4910)
DNA (207bp) protein (69aa)
Cold-shock protein Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PJQ9_9CAUL
Cold-shock protein {ECO:0000313|EMBL:ESQ94192.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
cold-shock DNA-binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_4708_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5181..5351)
DNA (171bp) protein (57aa)
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_4708_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5362..7152)
DNA (1791bp) protein (597aa)
ATP-binding cassette subfamily B Tax=Oceanibaculum indicum P24 RepID=K2JMW9_9PROT
ATP-binding cassette subfamily B {ECO:0000313|EMBL:EKE75797.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ABC transporter, ATPase and permease components
PLM4_65_b1_redo_sep16_scaffold_4708_10
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7336..7710
DNA (375bp) protein (125aa)
50S ribosomal protein L31 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L31
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_4708_11

Not on your lists

7946..8920
DNA (975bp) protein (325aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI00036022E3
Putative NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACV30054.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium B7P37metaSE.;"
oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_4708_12
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9073..10125
DNA (1053bp) protein (351aa)
ceramide glucosyltransferase (EC:2.4.1.80)
Ceramide glucosyltransferase {ECO:0000313|EMBL:ACK51945.1}; EC=2.4.1.80 {ECO:0000313|EMBL:ACK51945.1};; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Ceramide glucosyltransferase Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EKR7_METSB
PLM4_65_b1_redo_sep16_scaffold_4708_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10365..11696
DNA (1332bp) protein (444aa)
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein {ECO:0000313|EMBL:ABE61774.1}; EC=1.8.2.1 {ECO:0000313|EMBL:ABE61774.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPS3_NITHX
twin-arginine translocation pathway signal
PLM4_65_b1_redo_sep16_scaffold_4708_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11875..13266
DNA (1392bp) protein (464aa)
Acetamidase/Formamidase Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQ89_METS4
acetamidase/formamidase
Acetamidase/Formamidase {ECO:0000313|EMBL:ACA17217.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM4_65_b1_redo_sep16_scaffold_4708_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13272..14231
DNA (960bp) protein (320aa)
Periplasmic solute binding protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQ90_METS4
periplasmic solute binding protein
Periplasmic solute binding protein {ECO:0000313|EMBL:ACA17218.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM4_65_b1_redo_sep16_scaffold_4708_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14228..15553
DNA (1326bp) protein (442aa)
ABC-3 protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQ91_METS4
ABC-3 protein
ABC-3 protein {ECO:0000313|EMBL:ACA17219.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM4_65_b1_redo_sep16_scaffold_4708_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15612..16001
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGB0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64737.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM4_65_b1_redo_sep16_scaffold_4708_18
unknown

Not on your lists

comp(16025..16363)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4708_19
unknown

Not on your lists

comp(16530..16829)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4708_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16973..17677)
DNA (705bp) protein (235aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00035F2A3E
Uncharacterized protein {ECO:0000313|EMBL:EWY41104.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
lipoprotein
PLM4_65_b1_redo_sep16_scaffold_4708_21
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17677..18618)
DNA (942bp) protein (314aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZHF0_AZOL4
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJR62360.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4708_22
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18623..19399)
DNA (777bp) protein (259aa)
D-methionine transport ATP-binding protein MetN Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IT88_RHOCS
metN; D-methionine transport ATP-binding protein MetN
D-methionine transport ATP-binding protein MetN {ECO:0000313|EMBL:ACI98846.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_4708_23
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19399..20553)
DNA (1155bp) protein (385aa)
ABC transport system permease protein Tax=Azospirillum sp. (strain B510) RepID=D3P7B0_AZOS1
ABC transporter permease
ABC transport system permease protein {ECO:0000313|EMBL:BAI76539.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_4708_24
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20978..21841)
DNA (864bp) protein (288aa)
Phenylalanine 4-monooxygenase Tax=Ralstonia pickettii DTP0602 RepID=U3QT55_RALPI
Phenylalanine-4-hydroxylase {ECO:0000313|EMBL:KJV10358.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
phenylalanine 4-monooxygenase
PLM4_65_b1_redo_sep16_scaffold_4708_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21943..22506)
DNA (564bp) protein (188aa)
GCN5-like N-acetyltransferase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN29_9BURK
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGM30358.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GCN5 family acetyltransferase
PLM4_65_b1_redo_sep16_scaffold_4708_26
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22503..23402)
DNA (900bp) protein (300aa)
N-formylglutamate amidohydrolase Tax=Magnetospirillum sp. SO-1 RepID=M2Z2J9_9PROT
hydrolase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_4708_27
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23508..23999
DNA (492bp) protein (164aa)
MarR family transcriptional regulator Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE62_9GAMM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KGQ20074.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_4708_28
unknown

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24255..24332
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 28 items

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