ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1067

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1067_1
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(350..514)
DNA (165bp) protein (55aa)
Uncharacterized protein Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELN7_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50031.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
PLM4_65_b1_redo_sep16_scaffold_1067_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(636..779)
DNA (144bp) protein (48aa)
Uncharacterized protein Tax=Rhizobium sp. (strain NGR234) RepID=Q6W265_RHISN
Uncharacterized protein {ECO:0000313|EMBL:BAR57886.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1067_3
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(1157..2365)
DNA (1209bp) protein (403aa)
3-oxoacyl-[acyl-carrier-protein] synthase II Tax=uncultured Acidobacteria bacterium RepID=G8DPM2_9BACT
3-oxoacyl-[acyl-carrier-protein] synthase II {ECO:0000313|EMBL:AER58200.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
3-oxoacyl-(acyl-carrier-protein) synthase
PLM4_65_b1_redo_sep16_scaffold_1067_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2362..2622)
DNA (261bp) protein (87aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002FA761B
phosphopantetheine-binding protein
Acyl carrier protein {ECO:0000256|RuleBase:RU003545}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
PLM4_65_b1_redo_sep16_scaffold_1067_trna_3
unknown

Not on your lists

comp(3207..3278)
DNA (72bp)
transferRNA Val
PLM4_65_b1_redo_sep16_scaffold_1067_5
unknown

Not on your lists

comp(3432..3932)
DNA (501bp) protein (167aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1067_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4007..4801)
DNA (795bp) protein (265aa)
Beta-lactamase domain-containing protein Tax=Oceanibaculum indicum P24 RepID=K2K8N7_9PROT
metallo-beta-lactamase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_b1_redo_sep16_scaffold_1067_7
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4859..5248
DNA (390bp) protein (130aa)
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:CDX36299.1}; EC=4.1.1.44 {ECO:0000313|EMBL:CDX36299.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
4-carboxymuconolactone decarboxylase Tax=Methylopila sp. M107 RepID=UPI00037533BC
4-carboxymuconolactone decarboxylase
PLM4_65_b1_redo_sep16_scaffold_1067_8

Not on your lists

5258..6142
DNA (885bp) protein (295aa)
6-phosphogluconate dehydrogenase NAD-binding Tax=Frankia sp. EUN1f RepID=D3D379_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKL11312.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
6-phosphogluconate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_1067_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6395..7108
DNA (714bp) protein (238aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000372275B
ABC transporter {ECO:0000313|EMBL:ETX07039.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ABC transporter
PLM4_65_b1_redo_sep16_scaffold_1067_10
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7105..9468
DNA (2364bp) protein (788aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EMF7_BRASB
Uncharacterized protein {ECO:0000313|EMBL:ETW97277.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1067_11
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9474..10688
DNA (1215bp) protein (405aa)
Putative secretion protein putative membrane protein Tax=Bradyrhizobium sp. ORS 285 PF8_9BRAD">RepID=H0RPF8_9BRAD
Hemolysin D {ECO:0000313|EMBL:GAO37745.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
HlyD family secretion protein
PLM4_65_b1_redo_sep16_scaffold_1067_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10747..13152)
DNA (2406bp) protein (802aa)
lon; ATP-dependent Lon protease (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Lon protease Tax=Azospirillum sp. (strain B510) RepID=D3NVX3_AZOS1
PLM4_65_b1_redo_sep16_scaffold_1067_13
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13335..14597)
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=CLPX_RHOCS
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_1067_14
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14781..15434)
DNA (654bp) protein (218aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
ATP-dependent Clp protease proteolytic subunit Tax=Thalassospira profundimaris WP0211 RepID=K2KLR0_9PROT
Protease subunit of ATP-dependent Clp protease
PLM4_65_b1_redo_sep16_scaffold_1067_15
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15509..16855)
DNA (1347bp) protein (449aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
Trigger factor Tax=Magnetospirillum sp. SO-1 RepID=M2ZRA7_9PROT
tig; trigger factor
PLM4_65_b1_redo_sep16_scaffold_1067_16
Monosiga brevicollis, Monosiga, Choanoflagellida, Eukaryota

Not on your lists

comp(17011..17718)
DNA (708bp) protein (236aa)
SH3, pleckstrin-like and PDZ/DHR/GLGF domain-containing protein Tax=Monosiga brevicollis RepID=A9UNP0_MONBE
SH3, pleckstrin-like and PDZ/DHR/GLGF domain-containing protein {ECO:0000313|EMBL:EDQ92735.1}; species="Eukaryota; Choanoflagellida; Codonosigidae; Monosiga.;" source="Monosiga brevicollis (Choanoflagellate).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1067_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(17715..17945)
DNA (231bp) protein (77aa)
adenylate cyclase (EC:4.6.1.1)
FHA domain containing protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D8F7_9BACT
FHA domain containing protein {ECO:0000313|EMBL:EDY17350.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM4_65_b1_redo_sep16_scaffold_1067_trna_2
unknown

Not on your lists

comp(17993..18074)
DNA (82bp)
transferRNA Leu
PLM4_65_b1_redo_sep16_scaffold_1067_18
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18160..19089)
DNA (930bp) protein (310aa)
Putative permease, DMT superfamily Tax=Microvirga sp. WSM3557 RepID=I4YZX5_9RHIZ
hypothetical protein DUF6
Tax=RBG_16_Deltaproteobacteria_50_11_curated
PLM4_65_b1_redo_sep16_scaffold_1067_19
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19086..20015)
DNA (930bp) protein (310aa)
MarR family transcriptional regulator Tax=Bacillus oceanisediminis RepID=UPI0003051F6E
MarR family transcriptional regulator with acetyltransferase activity
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_65_b1_redo_sep16_scaffold_1067_20
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

20197..20748
DNA (552bp) protein (184aa)
Putative O-methyltransferase Tax=Nitrolancetus hollandicus Lb RepID=I4EFF0_9CHLR
Putative O-methyltransferase {ECO:0000313|EMBL:CCF83412.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
O-methyltransferase family 3
PLM4_65_b1_redo_sep16_scaffold_1067_21
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21086..21712)
DNA (627bp) protein (209aa)
ABC transporter permease Tax=Ralstonia pickettii DTP0602 RepID=U3R4N2_RALPI
Citrate:succinate antiporter {ECO:0000313|EMBL:KDR38069.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_1067_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22812..23192)
DNA (381bp) protein (127aa)
Rhodanese-like sulfurtransferase Tax=Sinorhizobium fredii USDA 257 RepID=I3X0V1_RHIFR
Rhodanese {ECO:0000313|EMBL:KFG67497.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
rhodanese-like sulfurtransferase
PLM4_65_b1_redo_sep16_scaffold_1067_23
unknown

Not on your lists

comp(23291..23494)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1067_24
Pseudoalteromonas lipolytica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23497..24813)
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Pseudoalteromonas agarivorans S816 RepID=N6V6J2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EWH07699.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas lipolytica SCSIO 04301.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1067_25
unknown

Not on your lists

25126..25713
DNA (588bp) protein (196aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1067_26
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25890..28346
DNA (2457bp) protein (819aa)
Serine/threonine protein kinase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMS5_9BURK
Serine/threonine protein kinase {ECO:0000313|EMBL:EHR70498.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1067_27
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28411..28857)
DNA (447bp) protein (149aa)
Putative uncharacterized protein Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KC62_NITWC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ29733.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
PLM4_65_b1_redo_sep16_scaffold_1067_28
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29182..30840
DNA (1659bp) protein (553aa)
Signal transduction histidine kinase Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XTF2_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EMS40903.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
signal transduction histidine kinase
Displaying items 1-30 of 57 in total

View Taxonomy