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PLM4_65_b1_redo_sep16_scaffold_1129

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1129_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..274)
DNA (273bp) protein (91aa)
formyl transferase domain-containing protein (EC:2.1.2.9)
hypothetical protein Tax=Methylopila sp. M107 RepID=UPI00037F5204
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1129_2
unknown

Not on your lists

447..683
DNA (237bp) protein (79aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1129_3
unknown

Not on your lists

comp(738..971)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1129_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1570..3999)
DNA (2430bp) protein (810aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B Tax=Oceanibaculum indicum P24 RepID=K2K1Z5_9PROT
PLM4_65_b1_redo_sep16_scaffold_1129_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3996..5252)
DNA (1257bp) protein (419aa)
DNA replication and repair protein RecF Tax=Azospirillum sp. (strain B510) RepID=D3NY86_AZOS1
recF; DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_1129_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5270..6388)
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta Tax=Azospirillum brasilense Sp245 RepID=G8AS72_AZOBR
DNA polymerase III subunit beta
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_1129_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6847..8337)
DNA (1491bp) protein (497aa)
chromosomal replication initiation protein Tax=Fodinicurvata sediminis RepID=UPI0003B4B824
dnaA; chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_1129_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8460..8906)
DNA (447bp) protein (149aa)
Rhodanese domain protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HNZ2_PARL1
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ABS61625.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM4_65_b1_redo_sep16_scaffold_1129_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9487..10386
DNA (900bp) protein (300aa)
NAD-dependent epimerase/dehydratase Tax=Azospirillum sp. (strain B510) RepID=D3NY83_AZOS1
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:BAI73362.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_1129_10
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10403..11146
DNA (744bp) protein (248aa)
Predicted ATPase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2VZY7_MAGSA
ATPase
Predicted ATPase {ECO:0000313|EMBL:BAE52838.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
PLM4_65_b1_redo_sep16_scaffold_1129_11
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11206..11478)
DNA (273bp) protein (91aa)
Adenylate cyclase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2VZW1_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:KJS40040.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
adenylate cyclase
PLM4_65_b1_redo_sep16_scaffold_1129_12
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12493..13281)
DNA (789bp) protein (263aa)
Predicted hydrolase or acyltransferase Tax=alpha proteobacterium BAL199 RepID=A8TUF8_9PROT
Alpha/beta hydrolase {ECO:0000313|EMBL:EWY42608.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
protein of the alpha/beta hydrolase superfamily
PLM4_65_b1_redo_sep16_scaffold_1129_13
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13367..14629
DNA (1263bp) protein (421aa)
glycosyl transferase (EC:2.4.1.57)
Glycosyl transferase, group 1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJJ4_RHOPH
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_1129_14
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14626..15618
DNA (993bp) protein (331aa)
Glycosyl transferase, family 9 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FN46_PHAMO
Glycosyl transferase, family 9 {ECO:0000313|EMBL:CCG39784.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
ADP-heptose of LPS heptosyltransferase
PLM4_65_b1_redo_sep16_scaffold_1129_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15886..17832
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
thrS; Threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase Tax=Oceanibaculum indicum P24 RepID=K2J4Y6_9PROT
PLM4_65_b1_redo_sep16_scaffold_1129_16
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17943..18422
DNA (480bp) protein (160aa)
translation initiation factor IF-3 Tax=Fodinicurvata sediminis RepID=UPI0003B5134E
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
translation initiation factor 3
PLM4_65_b1_redo_sep16_scaffold_1129_17
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18507..19061
DNA (555bp) protein (185aa)
Paraquat-inducible protein A Tax=Caenispirillum salinarum AK4 RepID=K9HR99_9PROT
Paraquat-inducible protein A {ECO:0000313|EMBL:EKV32808.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
paraquat-inducible protein A
PLM4_65_b1_redo_sep16_scaffold_1129_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19368..19571
DNA (204bp) protein (68aa)
50S ribosomal protein L35 Tax=Microvirga sp. WSM3557 RepID=I4YPA1_9RHIZ
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
LSU ribosomal protein L35p
PLM4_65_b1_redo_sep16_scaffold_1129_19
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19666..20025
DNA (360bp) protein (120aa)
50S ribosomal protein L20 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TGZ8_TISMK
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_1129_20
uncultured alpha proteobacterium, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20186..21361
DNA (1176bp) protein (392aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Proteobacteria; Alphaproteobacteria; environmental samples.;" source="uncultured alpha proteobacterium.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit Tax=uncultured alpha proteobacterium RepID=H5SJZ7_9PROT
PLM4_65_b1_redo_sep16_scaffold_1129_21
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21358..23778
DNA (2421bp) protein (807aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Phenylalanine--tRNA ligase beta subunit Tax=Oceanibaculum indicum P24 RepID=K2J4Z4_9PROT
phenylalanyl-tRNA synthetase subunit beta
PLM4_65_b1_redo_sep16_scaffold_1129_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23797..24261)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4N5_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72287.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM4_65_b1_redo_sep16_scaffold_1129_23
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

24337..25257
DNA (921bp) protein (307aa)
Formate/nitrite transporter bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
formate transporter
Tax=RBG_16_Chloroflexi_63_12_curated
PLM4_65_b1_redo_sep16_scaffold_1129_24
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25342..26367)
DNA (1026bp) protein (342aa)
UPI0003D025A7 related cluster Tax=unknown RepID=UPI0003D025A7
patatin
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
PLM4_65_b1_redo_sep16_scaffold_1129_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26371..28098)
DNA (1728bp) protein (576aa)
putative dihydrolipoyl dehydrogenase (EC:1.8.1.4)
Pyridine nucleotide-disulfide oxidoreductase dimerization region Tax=Oceanibaculum indicum P24 RepID=K2K601_9PROT
Dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:KJB93675.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
PLM4_65_b1_redo_sep16_scaffold_1129_26
unknown

Not on your lists

28290..29504
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SJH3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR20166.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1129_27
unknown

Not on your lists

29567..30259
DNA (693bp) protein (231aa)
GDSL family lipase Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCY9_9RHIZ
GDSL family lipase {ECO:0000313|EMBL:CPR20164.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
GDSL family lipase
PLM4_65_b1_redo_sep16_scaffold_1129_28
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30532..31767
DNA (1236bp) protein (412aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
Acetylornithine aminotransferase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S9D9_PHAFV
ornithine/acetylornithine aminotransferase
PLM4_65_b1_redo_sep16_scaffold_1129_29
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31829..32743
DNA (915bp) protein (305aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ornithine carbamoyltransferase Tax=Fodinicurvata sediminis RepID=UPI0003B40423
ornithine carbamoyltransferase
PLM4_65_b1_redo_sep16_scaffold_1129_30
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32740..33738
DNA (999bp) protein (333aa)
Molecular chaperone Hsp33 Tax=Oceanibaculum indicum P24 RepID=K2JIY8_9PROT
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hslO; heat shock protein HSP33
Displaying items 1-30 of 37 in total

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