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PLM4_65_b1_redo_sep16_scaffold_1220

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1220_1
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(254..1675)
DNA (1422bp) protein (474aa)
phenylhydantoinase (EC:3.5.2.2)
Dihydropyrimidinase Tax=Burkholderia vietnamiensis AU4i RepID=U2GCQ1_BURVI
Phenylhydantoinase {ECO:0000313|EMBL:KHD20471.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
PLM4_65_b1_redo_sep16_scaffold_1220_2
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1995..3038
DNA (1044bp) protein (348aa)
Twin-arginine translocation pathway signal Tax=Burkholderia sp. YI23 RepID=G8MH99_9BURK
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KAK48800.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
Twin-arginine translocation pathway signal
PLM4_65_b1_redo_sep16_scaffold_1220_3
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3045..3863
DNA (819bp) protein (273aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002E93E8C
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDR43713.1}; Pyrimidine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDY75676.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
ABC transporter, ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_1220_4
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3863..4708
DNA (846bp) protein (282aa)
Binding-protein-dependent transport systems inner membrane component Tax=Cupriavidus basilensis OR16 RepID=H1S3D8_9BURK
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHP42940.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
binding-protein-dependent transport systems inner membrane component
PLM4_65_b1_redo_sep16_scaffold_1220_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4737..6092
DNA (1356bp) protein (452aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI00031A2EF3
Invasion protein {ECO:0000313|EMBL:KGM31874.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
FAD dependent oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_1220_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6089..7243
DNA (1155bp) protein (385aa)
CoA transferase Tax=Variovorax paradoxus RepID=UPI0003743718
CoA-transferase {ECO:0000313|EMBL:KDP74228.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
CoA-transferase, family 3
PLM4_65_b1_redo_sep16_scaffold_1220_7
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7240..8013
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase Tax=Burkholderia sp. YI23 RepID=G8MH94_9BURK
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AET92961.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
PLM4_65_b1_redo_sep16_scaffold_1220_8
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8436..9788
DNA (1353bp) protein (451aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hemN; Oxygen-independent coproporphyrinogen-III oxidase (EC:1.3.99.22)
Coproporphyrinogen-III oxidase Tax=Oceanibaculum indicum P24 RepID=K2J1X7_9PROT
PLM4_65_b1_redo_sep16_scaffold_1220_9
unknown

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comp(10600..10950)
DNA (351bp) protein (117aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1220_10
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10964..11386)
DNA (423bp) protein (141aa)
Hemerythrin-like metal-binding protein Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MU9_MESSB
hemerythrin-like metal-binding protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM4_65_b1_redo_sep16_scaffold_1220_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11433..11936)
DNA (504bp) protein (168aa)
hypothetical protein bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_1220_12
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11929..13533)
DNA (1605bp) protein (535aa)
Cytochrome b/b6-like protein Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MU7_MESSB
cytochrome b/b6-like
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM4_65_b1_redo_sep16_scaffold_1220_13
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13530..14402)
DNA (873bp) protein (291aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI000370C6D0
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM4_65_b1_redo_sep16_scaffold_1220_14
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14416..15297)
DNA (882bp) protein (294aa)
Protoheme IX farnesyltransferase bin=GWE2_Gallionellales_58_10 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
protoheme IX farnesyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM4_65_b1_redo_sep16_scaffold_1220_15
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15341..17044)
DNA (1704bp) protein (568aa)
Cytochrome c oxidase (B(O/a)3-type) chain I Tax=Thalassobacter arenae DSM 19593 RepID=S9RTA5_9RHOB
Heme/copper-type cytochrome/quinol oxidase, subunit 1
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_1220_16
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17057..17608)
DNA (552bp) protein (184aa)
Cytochrome c oxidase subunit II Tax=Magnetospirillum sp. SO-1 RepID=M2YFR5_9PROT
Heme/copper-type cytochrome/quinol oxidase, subunit 2
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_1220_17
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17618..17809)
DNA (192bp) protein (64aa)
Uncharacterized protein Tax=Thalassobacter arenae DSM 19593 RepID=S9QB36_9RHOB
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM4_65_b1_redo_sep16_scaffold_1220_18
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18338..19531)
DNA (1194bp) protein (398aa)
CMP-binding protein Tax=Azoarcus toluclasticus RepID=UPI00037A8E87
CoA-transferase protein {ECO:0000313|EMBL:EME69674.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
CoA-transferase protein
PLM4_65_b1_redo_sep16_scaffold_1220_19
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19572..21911)
DNA (2340bp) protein (780aa)
Molybdopterin binding aldehyde oxidase and xanthine dehydrogenase Tax=Magnetospirillum sp. SO-1 RepID=M2Z4I9_9PROT
Molybdopterin binding aldehyde oxidase and xanthine dehydrogenase {ECO:0000313|EMBL:EME69280.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
large subunit of molybdenum enzyme
PLM4_65_b1_redo_sep16_scaffold_1220_20
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21923..22399)
DNA (477bp) protein (159aa)
Small Fe/S-containing subunit of molybdenum enzyme Tax=Magnetospirillum sp. SO-1 RepID=M2Y9I6_9PROT
small Fe/S-containing subunit of molybdenum enzyme
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_1220_21
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22383..23273)
DNA (891bp) protein (297aa)
Medium FAD-binding subunit of molybdenum enzyme Tax=Magnetospirillum sp. SO-1 RepID=M2ZPQ6_9PROT
Medium FAD-binding subunit of molybdenum enzyme {ECO:0000313|EMBL:EME69282.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
medium FAD-binding subunit of molybdenum enzyme
PLM4_65_b1_redo_sep16_scaffold_1220_22
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23296..24921)
DNA (1626bp) protein (542aa)
Methylmalonyl-CoA mutase subunit alpha Tax=Magnetospirillum sp. SO-1 RepID=M3AA95_9PROT
sbmA; methylmalonyl-CoA mutase subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_b1_redo_sep16_scaffold_1220_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24905..25312)
DNA (408bp) protein (136aa)
Methylmalonyl-CoA mutase C-terminal domain-containing protein Tax=Magnetospirillum sp. SO-1 RepID=M3A9U8_9PROT
SbmB; methylmalonyl-CoA mutase C-terminal domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_1220_24
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25338..26468)
DNA (1131bp) protein (377aa)
acyl-CoA dehydrogenase Tax=Azoarcus toluclasticus RepID=UPI000380CE81
acyl-CoA dehydrogenase
Tax=CG_Rhodocyc_01
PLM4_65_b1_redo_sep16_scaffold_1220_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26485..28176)
DNA (1692bp) protein (564aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ABJ07151.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ABJ07151.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
5-oxoprolinase (ATP-hydrolyzing) Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LN3_RHOP5
PLM4_65_b1_redo_sep16_scaffold_1220_26
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28219..28437)
DNA (219bp) protein (73aa)
Hydantoin utilization protein A Tax=Magnetospirillum sp. SO-1 RepID=M2ZPR1_9PROT
Hydantoin utilization protein A {ECO:0000313|EMBL:EME69287.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hyuA; hydantoin utilization protein A
Displaying 26 items

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