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PLM4_65_b1_redo_sep16_scaffold_1339

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1339_1
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..276)
DNA (276bp) protein (92aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
PREDICTED: NAD-dependent protein deacetylase SIR2rp3-like Tax=Pantholops hodgsonii RepID=UPI0003C1171E
NAD-dependent deacetylase
PLM4_65_b1_redo_sep16_scaffold_1339_2
unknown

Not on your lists

406..870
DNA (465bp) protein (155aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1339_3
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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867..1343
DNA (477bp) protein (159aa)
Protein tyrosine phosphatase Tax=Thauera sp. 63 RepID=N6YG88_9RHOO
Protein tyrosine phosphatase {ECO:0000313|EMBL:ENO78959.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
phosphotyrosine protein phosphatase
PLM4_65_b1_redo_sep16_scaffold_1339_4
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1377..2231
DNA (855bp) protein (285aa)
Ribulosamine/erythrulosamine 3-kinase Tax=Caenispirillum salinarum AK4 RepID=K9H3M2_9PROT
Ribulosamine/erythrulosamine 3-kinase {ECO:0000313|EMBL:EKV32880.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
Aminoglycoside phosphotransferase
PLM4_65_b1_redo_sep16_scaffold_1339_5
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2285..3073
DNA (789bp) protein (263aa)
hypothetical protein, hydrolase-like protein
Uncharacterized protein {ECO:0000313|EMBL:AII86487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
id=5080142 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
PLM4_65_b1_redo_sep16_scaffold_1339_6
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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3089..3406
DNA (318bp) protein (106aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5USL3_ROSS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ89616.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM4_65_b1_redo_sep16_scaffold_1339_7
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3452..4015)
DNA (564bp) protein (188aa)
2'-5' RNA ligase (EC:6.5.1.-)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
2'-5' RNA ligase, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVY2_RHOCS
PLM4_65_b1_redo_sep16_scaffold_1339_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4202..4702)
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8AHY4_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC96887.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM4_65_b1_redo_sep16_scaffold_1339_9
Burkholderia sp. KJ006, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4805..5374
DNA (570bp) protein (190aa)
Putative SAM-dependent methyltransferase Tax=Burkholderia sp. KJ006 RepID=I2DNL4_9BURK
SAM-dependent methyltransferase
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:AFJ86240.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. KJ006.;"
PLM4_65_b1_redo_sep16_scaffold_1339_10
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5390..6334)
DNA (945bp) protein (315aa)
SAM-dependent methyltransferase Tax=Fodinicurvata sediminis RepID=UPI0003B6C9B7
SAM-dependent methyltransferase {ECO:0000313|EMBL:EWY42760.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
methyltransferase
PLM4_65_b1_redo_sep16_scaffold_1339_11
unknown

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comp(6345..6758)
DNA (414bp) protein (138aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1339_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6768..7526)
DNA (759bp) protein (253aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short chain dehydrogenase Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z6B9_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_b1_redo_sep16_scaffold_1339_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7710..8147)
DNA (438bp) protein (146aa)
Small heat shock protein HSP20-like chaperone Tax=Azospirillum brasilense Sp245 RepID=G8ANJ6_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KGM34373.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
heat-shock protein
PLM4_65_b1_redo_sep16_scaffold_1339_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8309..9514)
DNA (1206bp) protein (402aa)
Putative oxygen-independent coproporphyrinogen III oxidase (HemN-like) {ECO:0000313|EMBL:CBS88185.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBS88185.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Putative oxygen-independent coproporphyrinogen III oxidase (HemN-like) Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6Y1_AZOL4
putative oxygen-independent coproporphyrinogen III oxidase (HemN-like)
PLM4_65_b1_redo_sep16_scaffold_1339_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9552..10139)
DNA (588bp) protein (196aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Non-canonical purine NTP pyrophosphatase Tax=Oceanibaculum indicum P24 RepID=K2JSE2_9PROT
putative deoxyribonucleotide triphosphate pyrophosphatase
PLM4_65_b1_redo_sep16_scaffold_1339_16
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10150..10569)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Mesorhizobium sp. STM 4661 RepID=M5F2Y8_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ15837.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
PLM4_65_b1_redo_sep16_scaffold_1339_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10792..11511)
DNA (720bp) protein (240aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH Tax=Magnetospirillum gryphiswaldense RepID=A4TUC5_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_1339_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12731
DNA (1089bp) protein (363aa)
Heat-inducible transcription repressor hrcA Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVK1_RHOCS
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hrcA; heat-inducible transcription repressor
PLM4_65_b1_redo_sep16_scaffold_1339_19
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12728..13429
DNA (702bp) protein (234aa)
GrpE protein HSP-70 cofactor (EC:5.1.3.1)
Protein GrpE Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=GRPE_METNO
Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
PLM4_65_b1_redo_sep16_scaffold_1339_20
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13613..14080)
DNA (468bp) protein (156aa)
Phosphotransferase system mannitol/fructose-specific IIA domain Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W083_MAGSA
PTS system nitrogen-specific IIA component PtsN {ECO:0000313|EMBL:KIL99758.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1339_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14135..14743)
DNA (609bp) protein (203aa)
Putative sigma (54) modulation protein Tax=Azospirillum brasilense Sp245 RepID=G8AT21_AZOBR
putative sigma (54) modulation protein
Putative sigma (54) modulation protein {ECO:0000313|EMBL:CCD00582.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM4_65_b1_redo_sep16_scaffold_1339_22
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15065..16582)
DNA (1518bp) protein (506aa)
RNA polymerase sigma-54 factor Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A885_9PROT
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
rpoN; RNA polymerase sigma-54 factor
PLM4_65_b1_redo_sep16_scaffold_1339_23
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16594..17400)
DNA (807bp) protein (269aa)
ABC transporter ATP-binding protein Tax=Oceanibaculum indicum P24 RepID=K2J1L1_9PROT
lptB; Lipopolysaccharide export system ATP-binding protein lptB
Lipopolysaccharide export system ATP-binding protein lptB {ECO:0000313|EMBL:CCQ75135.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
PLM4_65_b1_redo_sep16_scaffold_1339_24
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17454..18386)
DNA (933bp) protein (311aa)
Hypothetical secreted protein Tax=alpha proteobacterium BAL199 RepID=A8TSN3_9PROT
Hypothetical secreted protein {ECO:0000313|EMBL:EDP64289.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1339_25
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18391..19140)
DNA (750bp) protein (250aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JNM0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE76878.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
conserved protein of unknown function
PLM4_65_b1_redo_sep16_scaffold_1339_26
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19144..20169)
DNA (1026bp) protein (342aa)
KpsF/GutQ family protein (EC:5.3.1.13)
Sugar phosphate Isomerase Tax=uncultured bacterium RepID=C5JBK2_9BACT
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_1339_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20323..20955)
DNA (633bp) protein (211aa)
Ribonuclease D Tax=Oceanibaculum indicum P24 RepID=K2K1Y7_9PROT
Ribonuclease D {ECO:0000313|EMBL:EKE76879.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
3\'-5\' exonuclease
PLM4_65_b1_redo_sep16_scaffold_1339_trna_1
unknown

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comp(21024..21107)
DNA (84bp)
transferRNA Leu
PLM4_65_b1_redo_sep16_scaffold_1339_28
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21264..22229
DNA (966bp) protein (322aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000371A1CC
3-beta-hydroxy-delta(5)-steroid dehydrogenase {ECO:0000313|EMBL:EWY38050.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
NAD-dependent epimerase/dehydratase
PLM4_65_b1_redo_sep16_scaffold_1339_29
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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22735..24201
DNA (1467bp) protein (489aa)
gltD; putative oxidoreductase (EC:1.4.1.13)
Glutamate synthase, small subunit {ECO:0000313|EMBL:ACJ00558.1}; EC=1.4.1.13 {ECO:0000313|EMBL:ACJ00558.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
oxidoreductase Tax=Fodinicurvata sediminis RepID=UPI0003B3CBCC
Displaying items 1-30 of 32 in total

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